Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G6L97_RS10220 Genome accession   NZ_CP115841
Coordinates   2053334..2054299 (+) Length   321 a.a.
NCBI ID   WP_174002895.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain G3/79     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2048334..2059299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L97_RS10195 (G6L97_10195) - 2048625..2049569 (+) 945 WP_174002893.1 tripartite tricarboxylate transporter substrate binding protein -
  G6L97_RS10200 (G6L97_10200) - 2049566..2050060 (+) 495 WP_013636754.1 tripartite tricarboxylate transporter TctB family protein -
  G6L97_RS10205 (G6L97_10205) - 2050168..2051685 (+) 1518 WP_003514036.1 tripartite tricarboxylate transporter permease -
  G6L97_RS10210 (G6L97_10210) - 2051815..2052075 (+) 261 WP_003514037.1 hypothetical protein -
  G6L97_RS10215 (G6L97_10215) - 2052276..2053214 (+) 939 WP_013636756.1 siderophore ABC transporter substrate-binding protein -
  G6L97_RS10220 (G6L97_10220) ceuB 2053334..2054299 (+) 966 WP_174002895.1 ABC transporter permease Machinery gene
  G6L97_RS10225 (G6L97_10225) - 2054292..2055260 (+) 969 WP_003514044.1 iron chelate uptake ABC transporter family permease subunit -
  G6L97_RS10230 (G6L97_10230) - 2055257..2056015 (+) 759 WP_111783478.1 ABC transporter ATP-binding protein -
  G6L97_RS10235 (G6L97_10235) dps 2056141..2056629 (+) 489 WP_003514046.1 DNA starvation/stationary phase protection protein Dps -
  G6L97_RS10240 (G6L97_10240) - 2056707..2056928 (-) 222 WP_013636760.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34176.17 Da        Isoelectric Point: 11.0429

>NTDB_id=706110 G6L97_RS10220 WP_174002895.1 2053334..2054299(+) (ceuB) [Agrobacterium tumefaciens strain G3/79]
MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSADALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLLAPETPIFGKMLVAAAFALAGTGLFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLACDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=706110 G6L97_RS10220 WP_174002895.1 2053334..2054299(+) (ceuB) [Agrobacterium tumefaciens strain G3/79]
GTGAAATCCCTGTCCCTCATCCTCGCCCTCCTTCTGGCGCTGACACTCGCCATCGTCAGCCTGTTCGTCGGCGTGAGCAA
CGTCTCGCTGGCGACGCTTTTTGCGCCGGATACGAGCGCGGATGCACTGCGGGTGCTCCTCGTCAGCCGCATTCCGCGCA
CGCTGGCGCTCATACTAGCCGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGCTTCGTG
GAGCCTTCGACGGCTGGCACCACCGAATCCGCCGGCCTTGGCCTGCTCACCGTCACCCTGCTTGCCCCGGAAACGCCGAT
CTTCGGCAAGATGCTGGTGGCCGCCGCTTTCGCGCTGGCGGGAACCGGACTTTTCCTGCGTATTCTACGGCAGGTGCCGC
TGCGCGATGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTTCTGCCGTCACCACTTTCTTCGCCTAT
CGTTTCGATCTGCTGCAATCGCTCGGCGCGTGGATGACCGGGGATTTTTCCGGCGTGCTGCGTGGCCGCTATGAATTGCT
GTGGATCGGCTTCGTTTTCGCCATCGCTGCCTATCTCGCCGCCGACCGTTTCACGGTGGCAGGCATGGGGCGCGACTTCA
CCACCAATCTCGGACTGAACTATCGCCGGGTGATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGTGCCGTCGTCGTC
GTCACGGTGGGTATGATCCCCTTTCTCGGCCTGATCGTGCCGAATGTGGTCAGCCTGATGATCGGCGACAATATGCGCCG
TTCCGTGCCCTGGGTGGCGACGCTTGGCGCGGTCTTCGTTCTTGCCTGCGACATCATCGGCAGAACGGTGCGCGCGCCCT
ATGAGATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGCGTTGTTCCTCTATCTCCTGCTCCGGAAACGCCACCAT
GCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.574

99.377

0.433