Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G6L97_RS05290 Genome accession   NZ_CP115841
Coordinates   1056292..1057014 (-) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain G3/79     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051292..1062014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L97_RS05280 (G6L97_05280) - 1052716..1055151 (+) 2436 WP_127966022.1 ComEC/Rec2 family competence protein -
  G6L97_RS05285 (G6L97_05285) - 1055168..1055851 (-) 684 WP_111783098.1 glutathione S-transferase family protein -
  G6L97_RS05290 (G6L97_05290) dinR/lexA 1056292..1057014 (-) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  G6L97_RS05295 (G6L97_05295) - 1057226..1058107 (+) 882 WP_111783097.1 VOC family protein -
  G6L97_RS05300 (G6L97_05300) kdsA 1058107..1058952 (+) 846 WP_111783096.1 3-deoxy-8-phosphooctulonate synthase -
  G6L97_RS05305 (G6L97_05305) eno 1059100..1060374 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  G6L97_RS05310 (G6L97_05310) - 1060711..1061028 (+) 318 WP_003512872.1 septum formation initiator family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=706098 G6L97_RS05290 WP_003512859.1 1056292..1057014(-) (dinR/lexA) [Agrobacterium tumefaciens strain G3/79]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=706098 G6L97_RS05290 WP_003512859.1 1056292..1057014(-) (dinR/lexA) [Agrobacterium tumefaciens strain G3/79]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGCGGGTTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAACTGCCCGAGGCTTATACGCCGGGCGCAAGGCCGCAG
CGCGGCTTTTCGCCAAGCGTTATCGAAGGCAGCCTTGGCAAACCCAAAACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTGGGCGGGGCTGTCACCGTGCCGGTCATGGGCCGCATCGCCGCGGGCGTGCCAATTTCCGCCATCCAGA
ACAACACCCATGATGTGGCAGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCGCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGATATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTTCGCCGCAAGGGAGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATCTTCGGGCCCGACCGGGTGAAAATTCAGGGCAAGCTGGTTGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363