Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   G6L97_RS01710 Genome accession   NZ_CP115841
Coordinates   357444..359264 (-) Length   606 a.a.
NCBI ID   WP_111783300.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain G3/79     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 352444..364264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L97_RS01685 (G6L97_01685) - 353222..353461 (+) 240 WP_019564234.1 DUF4170 domain-containing protein -
  G6L97_RS01690 (G6L97_01690) waaA 353677..354999 (+) 1323 WP_013635565.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  G6L97_RS01695 (G6L97_01695) - 354993..355730 (+) 738 WP_019564232.1 HAD family hydrolase -
  G6L97_RS01700 (G6L97_01700) lpxK 355895..356941 (+) 1047 WP_111783301.1 tetraacyldisaccharide 4'-kinase -
  G6L97_RS01705 (G6L97_01705) - 357073..357294 (-) 222 WP_003519053.1 DUF2093 domain-containing protein -
  G6L97_RS01710 (G6L97_01710) hexB 357444..359264 (-) 1821 WP_111783300.1 DNA mismatch repair endonuclease MutL Machinery gene
  G6L97_RS01715 (G6L97_01715) - 359672..361291 (+) 1620 WP_162686650.1 response regulator -
  G6L97_RS01720 (G6L97_01720) - 361433..362785 (+) 1353 WP_003519050.1 bifunctional diguanylate cyclase/phosphodiesterase -
  G6L97_RS01725 (G6L97_01725) - 362880..363767 (-) 888 WP_111783298.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 65090.84 Da        Isoelectric Point: 6.2864

>NTDB_id=706089 G6L97_RS01710 WP_111783300.1 357444..359264(-) (hexB) [Agrobacterium tumefaciens strain G3/79]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLSITSRQHGAEQGSVISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLSGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSLTLDPAFVDVNVHPAKSDVRFRDPGLVRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSNLRPSAAATWSAAASPSRPLAVSGNMQFAEAVQSRFSDITMPTARAEPRE
VYEASASPSLEPSQYPLGAARAQLHQNYIVAQTEDGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED
CDMLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG
RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=706089 G6L97_RS01710 WP_111783300.1 357444..359264(-) (hexB) [Agrobacterium tumefaciens strain G3/79]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCCTCCAGCGCCAC
GAAGGAGCTGGTGGAAAACGCCATCGACGCGGGCGCAACGCGCATCGAAATCGCCACGGCGGGCGGTGGCAAGGGACTGG
TGCGCATCACCGATAACGGCTCCGGCATGTCGCCTGCCGATCTGGAGCTTGCGGTCCGACGCCATTGCACCTCGAAAATA
TCCACCACGCTTGACGATATCCGCACGCTTGGCTTTCGCGGCGAGGCCCTGCCCTCCATCGGCTCGGTTGCCAAGCTTTC
CATCACCAGCCGGCAACACGGCGCAGAACAGGGTTCGGTGATCTCCGTCACCGGCGGCAAAGTCTCCGAGGTCCGGCCCG
CCGCGGCCAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTTTTCGCGACGCCCGCACGGCTGAAATTCCTGAAAACG
GAGCGAGCGGAGGCAGCCGCCATTACCGAAGTCGTCAAGCGGATGGCAATTGCCTTTCCGCATATCCGCTTCGTGCTGTC
AGGCACCGACCGCTCCACGCTTGAAATCCCCTCCACCGGCGACGATCATCTTGCCCGCATGGCGCAGATTCTCGGTGCCG
AGTTCAAGGACAACGCCATCGAAATCGATGCCGGGCGCGAGGATGTAACGCTCTCCGGTTTTGCCGGCGTGCCGACCTTC
AACCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAACGGTCGCCCGGTGCAGGACAAATTGCTGTTGTCCGCCATTCG
CGGTGCCTATGCCGAAACCGTGCCGCACGGGCGATATCCGGTCGCGGTGCTGTCCCTGACGCTCGATCCCGCCTTTGTCG
ACGTGAACGTGCATCCGGCGAAATCAGATGTGCGCTTCCGCGATCCCGGCCTGGTTCGCGGGCTGATCGTCGGTGCGATC
CGCCAGGCGCTGACCCGCGACGGTGACAGGGCGGCGACGACTGGTGCCAGCCAGATGATGAACGCCTTTCGCCCCGGCTA
CAGCCCGTCCAATCTCCGACCGTCTGCCGCTGCGACATGGTCCGCCGCGGCCTCGCCTTCCCGACCGCTTGCCGTTTCCG
GGAACATGCAATTTGCCGAGGCCGTGCAATCGCGCTTTTCCGACATCACCATGCCGACCGCGCGGGCAGAACCCCGCGAG
GTTTACGAGGCCTCTGCAAGCCCGTCGCTGGAACCGTCACAATATCCGCTCGGCGCCGCGCGGGCGCAGTTGCACCAGAA
CTACATCGTCGCGCAGACGGAAGACGGCCTCGTCATCGTCGACCAGCATGCGGCGCATGAACGGCTGGTGTTTGAGGAAA
TGCGCAATGCGCTGCATTCCAGACGCCCGCCTTCACAGGTGCTGCTCATTCCTGAGATCATCGACCTTCCCGAAGAGGAT
TGCGACATGCTGATGGATCATGCGGCTGGTTTCGATGCGCTGGGACTGGTCATCGAGCGTTTCGGGCCGGGGGCGGTCGC
GGTTCGCGAAACGCCGGCGATGCTTGGCGAGGTGAACGTGCAGGGGCTGGTGCGGCAGCTTGCCGACGAGATCGCTGAAT
GGGACGCTGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCCGCCACCATGGCTTGCCACGGCTCGGTGCGTTCAGGG
CGGCGCATGCGGCCGGAGGAGATGAACGCGCTTTTACGGCAGATGGAAAACACGCCGGGTTCAGGACAGTGCAATCACGG
TCGTCCGACCTATATTGAGCTAAAACTTTCCGATATAGAACGTCTCTTCGGCCGAAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

MutL C terminal dimerisation domain (MutL_C)

(416-562)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.161

100

0.363