Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGCSD_RS10310 Genome accession   NZ_AP018726
Coordinates   2085723..2087084 (+) Length   453 a.a.
NCBI ID   WP_129556330.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2080723..2092084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS10295 (FGCSD_2008) - 2082416..2084200 (+) 1785 WP_129556328.1 ABC transporter ATP-binding protein -
  FGCSD_RS10300 (FGCSD_2009) - 2084319..2085086 (+) 768 WP_015058074.1 epoxyqueuosine reductase QueH -
  FGCSD_RS10305 (FGCSD_2010) - 2085194..2085640 (+) 447 WP_129556329.1 dUTP diphosphatase -
  FGCSD_RS10310 (FGCSD_2011) radA 2085723..2087084 (+) 1362 WP_129556330.1 DNA repair protein RadA Machinery gene
  FGCSD_RS10315 (FGCSD_2012) - 2087274..2087768 (+) 495 WP_129556331.1 carbonic anhydrase -
  FGCSD_RS10320 (FGCSD_2013) - 2087904..2088620 (+) 717 WP_129556332.1 TIGR00266 family protein -
  FGCSD_RS10325 (FGCSD_2014) - 2088849..2089295 (+) 447 WP_129556333.1 LytTR family DNA-binding domain-containing protein -
  FGCSD_RS10330 (FGCSD_2015) - 2089299..2090000 (+) 702 WP_129556334.1 hypothetical protein -
  FGCSD_RS10335 (FGCSD_2016) - 2090095..2091363 (+) 1269 WP_129556335.1 MFS transporter -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49340.61 Da        Isoelectric Point: 6.0944

>NTDB_id=70606 FGCSD_RS10310 WP_129556330.1 2085723..2087084(+) (radA) [Streptococcus dysgalactiae strain Kdys0611]
MAKKKANFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=70606 FGCSD_RS10310 WP_129556330.1 2085723..2087084(+) (radA) [Streptococcus dysgalactiae strain Kdys0611]
ATAGCAAAGAAAAAAGCAAACTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
TTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTCGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCCACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGCTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAACGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTAAATCCAGATTTCTTGATTATTGATTCTATCCAGACCATTATGAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAATATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGGACTTTGGCTGGTCCTCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCCTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAACCCAAGTCAGGTCTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAACCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGTTAGACGAACCTGCTATTGATTTAGCTGTAGCCGTGGCCA
TCGCATCCAGTTATAAGGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.283

99.779

0.861
  radA Streptococcus pneumoniae Rx1

86.062

99.779

0.859
  radA Streptococcus pneumoniae D39

86.062

99.779

0.859
  radA Streptococcus pneumoniae R6

86.062

99.779

0.859
  radA Streptococcus pneumoniae TIGR4

86.062

99.779

0.859
  radA Streptococcus mitis SK321

86.062

99.779

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625

Multiple sequence alignment