Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NL778_RS02205 Genome accession   NZ_CP100652
Coordinates   486452..486853 (+) Length   133 a.a.
NCBI ID   WP_012312414.1    Uniprot ID   -
Organism   Pseudomonas putida strain HSM-C2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 481452..491853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL778_RS02175 (NL778_02175) - 481506..482510 (-) 1005 WP_012312408.1 aspartate carbamoyltransferase catalytic subunit -
  NL778_RS02180 (NL778_02180) pyrR 482524..483042 (-) 519 WP_012312409.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  NL778_RS02185 (NL778_02185) ruvX 483092..483517 (-) 426 WP_012312410.1 Holliday junction resolvase RuvX -
  NL778_RS02190 (NL778_02190) - 483517..484086 (-) 570 WP_012312411.1 YqgE/AlgH family protein -
  NL778_RS02195 (NL778_02195) - 484206..485108 (-) 903 WP_012312412.1 energy transducer TonB -
  NL778_RS02200 (NL778_02200) gshB 485255..486208 (-) 954 WP_254467046.1 glutathione synthase -
  NL778_RS02205 (NL778_02205) pilG 486452..486853 (+) 402 WP_012312414.1 PleD family two-component system response regulator Regulator
  NL778_RS02210 (NL778_02210) pilH 486901..487266 (+) 366 WP_012312415.1 twitching motility response regulator PilH -
  NL778_RS02215 (NL778_02215) - 487263..487817 (+) 555 WP_012312416.1 chemotaxis protein CheW -
  NL778_RS02220 (NL778_02220) - 487865..489889 (+) 2025 WP_218176341.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14604.82 Da        Isoelectric Point: 5.5823

>NTDB_id=706052 NL778_RS02205 WP_012312414.1 486452..486853(+) (pilG) [Pseudomonas putida strain HSM-C2]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPQIIFVDVLMPRLDGYQTCAVIKHNSAFKDIP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAISAHVPGFAAHEQNAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=706052 NL778_RS02205 WP_012312414.1 486452..486853(+) (pilG) [Pseudomonas putida strain HSM-C2]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCACGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
AGGCTGCGAGGTGATCACCGCCAGCGACGGTTTCGATGCCCTGGCCAAGATCGTTGACCACCAGCCACAGATCATCTTCG
TCGACGTGCTCATGCCGCGCCTGGATGGCTACCAGACCTGCGCCGTGATCAAGCACAACAGTGCCTTCAAGGACATCCCG
GTCATCCTACTGTCGTCGCGCGATGGCCTGTTCGACAAGGCGCGCGGGCGGGTGGTCGGCTCCGACCAGTTCCTGACCAA
GCCATTCAGCAAGGAAGAACTGCTCGACGCTATCAGCGCCCACGTGCCCGGGTTCGCCGCGCACGAACAAAACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632