Detailed information NTG0070603

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: FGCSD_RS09750
• Genome accession: NZ_AP018726
• Coordinates: 1968083..1969015 (-)
• Length: 310 a.a.
• NCBI ID: WP_129556268.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae strain Kdys0611
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1963083..1974015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGCSD_RS09725 (FGCSD_1894)	tsaD	1963571..1964587 (-)	1017	WP_129556266.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
FGCSD_RS09730 (FGCSD_1895)	rimI	1964577..1965002 (-)	426	WP_115245668.1	ribosomal protein S18-alanine N-acetyltransferase	-
FGCSD_RS09735 (FGCSD_1896)	tsaB	1965004..1965702 (-)	699	WP_129556267.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
FGCSD_RS09740 (FGCSD_1897)	-	1965988..1966218 (+)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
FGCSD_RS09745 (FGCSD_1898)	rnjA	1966220..1967902 (+)	1683	WP_003056700.1	ribonuclease J1	-
FGCSD_RS09750 (FGCSD_1899)	amiF	1968083..1969015 (-)	933	WP_129556268.1	ATP-binding cassette domain-containing protein	Regulator
FGCSD_RS09755 (FGCSD_1900)	oppD	1969008..1970060 (-)	1053	WP_129556269.1	ABC transporter ATP-binding protein	Regulator
FGCSD_RS09760 (FGCSD_1901)	-	1970072..1971103 (-)	1032	WP_129556270.1	ABC transporter permease	-
FGCSD_RS09765 (FGCSD_1902)	-	1971113..1972027 (-)	915	WP_003052794.1	ABC transporter permease	-
FGCSD_RS09770 (FGCSD_1903)	-	1972295..1973950 (-)	1656	WP_003058031.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35263.12 Da
• Isoelectric Point: 6.7326

>NTDB_id=70603 FGCSD_RS09750 WP_129556268.1 1968083..1969015(-) (amiF) [Streptococcus dysgalactiae strain Kdys0611]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVNFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEAEQYRREYR

Nucleotide

• Length: 933 bp

>NTDB_id=70603 FGCSD_RS09750 WP_129556268.1 1968083..1969015(-) (amiF) [Streptococcus dysgalactiae strain Kdys0611]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAACTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCTGGCTCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTAACAGCTTCAAAAGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAATAAGGACCATTTGACACGTTACCCTCATGAATTTTCTGGTGGGCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTGAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTGGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGATCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAAATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTGCTCTCGGCTATTCCTGAGCCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTGTATGATCCAAGTCAAGAATTGGACGGTCAAGAGCGTCAGATGCATGAGATTACTCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGAGCAATATCGACGGGAGTATCGTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.387	0.539
amiF	Streptococcus thermophilus LMG 18311	54.426	98.387	0.535
amiF	Streptococcus salivarius strain HSISS4	54.098	98.387	0.532