Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NLW79_RS13800 Genome accession   NZ_CP100651
Coordinates   2664352..2665119 (-) Length   255 a.a.
NCBI ID   WP_024122086.1    Uniprot ID   A0A9Q4HQQ6
Organism   Bacillus halotolerans strain MEC_B334     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2659352..2670119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS13780 (NLW79_13780) - 2659526..2660338 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  NLW79_RS13785 (NLW79_13785) ccpN 2660364..2661002 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  NLW79_RS13790 (NLW79_13790) glyS 2661136..2663175 (-) 2040 WP_254517752.1 glycine--tRNA ligase subunit beta -
  NLW79_RS13795 (NLW79_13795) glyQ 2663168..2664055 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  NLW79_RS13800 (NLW79_13800) recO 2664352..2665119 (-) 768 WP_024122086.1 DNA repair protein RecO Machinery gene
  NLW79_RS13805 (NLW79_13805) - 2665156..2665299 (-) 144 WP_024122087.1 YqzL family protein -
  NLW79_RS13810 (NLW79_13810) era 2665443..2666348 (-) 906 WP_101864543.1 GTPase Era -
  NLW79_RS13815 (NLW79_13815) cdd 2666329..2666739 (-) 411 WP_024122088.1 cytidine deaminase -
  NLW79_RS13820 (NLW79_13820) - 2666853..2667230 (-) 378 WP_254517759.1 diacylglycerol kinase family protein -
  NLW79_RS13825 (NLW79_13825) ybeY 2667211..2667684 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  NLW79_RS13830 (NLW79_13830) pgpH 2667685..2669820 (-) 2136 WP_106020117.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29333.03 Da        Isoelectric Point: 8.3105

>NTDB_id=706018 NLW79_RS13800 WP_024122086.1 2664352..2665119(-) (recO) [Bacillus halotolerans strain MEC_B334]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=706018 NLW79_RS13800 WP_024122086.1 2664352..2665119(-) (recO) [Bacillus halotolerans strain MEC_B334]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCAGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTATCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.51

100

0.945