Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NLW79_RS10565 Genome accession   NZ_CP100651
Coordinates   2126297..2127427 (+) Length   376 a.a.
NCBI ID   WP_254518283.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B334     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2115625..2135700 2126297..2127427 within 0


Gene organization within MGE regions


Location: 2115625..2135700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS10465 (NLW79_10465) - 2115625..2116128 (+) 504 WP_106022522.1 DinB family protein -
  NLW79_RS10470 (NLW79_10470) - 2116335..2116553 (+) 219 WP_254518282.1 hypothetical protein -
  NLW79_RS10475 (NLW79_10475) - 2116699..2117211 (-) 513 WP_095713069.1 GNAT family N-acetyltransferase -
  NLW79_RS10485 (NLW79_10485) - 2117580..2117738 (-) 159 Protein_2018 N-acetyltransferase -
  NLW79_RS10490 (NLW79_10490) - 2118060..2118797 (-) 738 WP_106022520.1 hypothetical protein -
  NLW79_RS10495 (NLW79_10495) - 2118885..2119997 (-) 1113 WP_106022519.1 DUF5677 domain-containing protein -
  NLW79_RS10500 (NLW79_10500) - 2120033..2120176 (-) 144 WP_223255289.1 hypothetical protein -
  NLW79_RS10505 (NLW79_10505) - 2120250..2120618 (-) 369 WP_106022517.1 hypothetical protein -
  NLW79_RS10510 (NLW79_10510) - 2121162..2121378 (-) 217 Protein_2023 hypothetical protein -
  NLW79_RS10515 (NLW79_10515) - 2121382..2121633 (-) 252 Protein_2024 hypothetical protein -
  NLW79_RS10520 (NLW79_10520) - 2121704..2121883 (+) 180 WP_106022516.1 hypothetical protein -
  NLW79_RS10525 (NLW79_10525) - 2121971..2122594 (-) 624 WP_024571441.1 hypothetical protein -
  NLW79_RS10530 (NLW79_10530) - 2123096..2123326 (+) 231 WP_127696872.1 hypothetical protein -
  NLW79_RS22115 - 2123334..2123393 (-) 60 WP_255004945.1 hypothetical protein -
  NLW79_RS10535 (NLW79_10535) - 2123509..2123655 (-) 147 WP_316961074.1 UPF0715 family protein -
  NLW79_RS10540 (NLW79_10540) - 2123966..2124129 (-) 164 Protein_2030 hypothetical protein -
  NLW79_RS10545 (NLW79_10545) - 2124383..2124859 (-) 477 WP_223257246.1 hypothetical protein -
  NLW79_RS10550 (NLW79_10550) - 2124953..2125186 (-) 234 WP_106021718.1 hypothetical protein -
  NLW79_RS10555 (NLW79_10555) - 2125534..2125794 (+) 261 WP_127696871.1 hypothetical protein -
  NLW79_RS10560 (NLW79_10560) - 2126042..2126212 (+) 171 WP_240312863.1 hypothetical protein -
  NLW79_RS10565 (NLW79_10565) rapC 2126297..2127427 (+) 1131 WP_254518283.1 tetratricopeptide repeat protein Regulator
  NLW79_RS10570 (NLW79_10570) - 2127417..2127560 (+) 144 WP_024121692.1 hypothetical protein -
  NLW79_RS10575 (NLW79_10575) - 2127589..2128470 (-) 882 Protein_2037 UV damage repair protein UvrX -
  NLW79_RS10580 (NLW79_10580) ppsA 2128770..2131373 (-) 2604 WP_188323046.1 phosphoenolpyruvate synthase -
  NLW79_RS10590 (NLW79_10590) - 2133176..2133260 (+) 85 Protein_2040 putative holin-like toxin -
  NLW79_RS10595 (NLW79_10595) - 2133919..2134596 (-) 678 WP_254518284.1 site-specific integrase -
  NLW79_RS22175 - 2134733..2134972 (-) 240 WP_367616837.1 Arm DNA-binding domain-containing protein -
  NLW79_RS10600 (NLW79_10600) - 2134909..2135055 (-) 147 WP_223203879.1 hypothetical protein -
  NLW79_RS10605 (NLW79_10605) - 2135281..2135700 (-) 420 WP_024121695.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44277.00 Da        Isoelectric Point: 6.1971

>NTDB_id=706005 NLW79_RS10565 WP_254518283.1 2126297..2127427(+) (rapC) [Bacillus halotolerans strain MEC_B334]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEAEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGNEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=706005 NLW79_RS10565 WP_254518283.1 2126297..2127427(+) (rapC) [Bacillus halotolerans strain MEC_B334]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGCTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAAACGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452