Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NL677_RS05570 Genome accession   NZ_CP100646
Coordinates   1093495..1094262 (-) Length   255 a.a.
NCBI ID   WP_065843754.1    Uniprot ID   A0A5L9WQ03
Organism   Campylobacter fetus subsp. fetus strain M20-08756-1A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1088495..1099262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL677_RS05540 (NL677_05535) tatB 1088787..1089242 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  NL677_RS05545 (NL677_05540) tatC 1089242..1089997 (+) 756 WP_065844321.1 twin-arginine translocase subunit TatC -
  NL677_RS05550 (NL677_05545) queA 1089994..1091013 (+) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NL677_RS05555 (NL677_05550) - 1091023..1092267 (+) 1245 WP_251146929.1 hypothetical protein -
  NL677_RS05560 (NL677_05555) - 1092253..1093116 (-) 864 WP_065844323.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  NL677_RS05565 (NL677_05560) dprB 1093124..1093498 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  NL677_RS05570 (NL677_05565) dprA 1093495..1094262 (-) 768 WP_065843754.1 DNA-processing protein DprA Machinery gene
  NL677_RS05575 (NL677_05570) - 1094246..1094572 (-) 327 WP_394803822.1 divergent polysaccharide deacetylase family protein -
  NL677_RS05580 (NL677_05575) - 1094583..1095332 (-) 750 WP_316376888.1 divergent polysaccharide deacetylase family protein -
  NL677_RS05585 (NL677_05580) ilvC 1095411..1096433 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  NL677_RS05590 (NL677_05585) - 1096579..1097391 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28266.38 Da        Isoelectric Point: 5.4056

>NTDB_id=705937 NL677_RS05570 WP_065843754.1 1093495..1094262(-) (dprA) [Campylobacter fetus subsp. fetus strain M20-08756-1A]
MDFITDILSLKKLKKPVNKLYYKGNLELLNFPKVAIVGSRKCTSYTKNIVLSLASTLKNYGICVVSGAAIGTDIHAHEGA
FPNTIAVFGNGLNNIYPAQNSKMIEKIYKDALALSEYEPNTFATPWSFLERNRIVVSLSDAVIIAEADIKSGSMSSARLA
LDMGIPLFVLPQRFNESNGTNDLLSKNRANLIADFDEFASKFGSLNSDLSKDDVLEFIKINQNFDECYARFGDALYEYEL
EGKISIDGVYIRILS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=705937 NL677_RS05570 WP_065843754.1 1093495..1094262(-) (dprA) [Campylobacter fetus subsp. fetus strain M20-08756-1A]
ATGGACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAAACTATATTATAAAGGAAATTTAGA
ACTCTTAAATTTCCCCAAAGTAGCGATAGTCGGCTCGAGAAAATGTACTTCTTATACAAAAAATATTGTTTTGAGTTTAG
CCTCTACTCTTAAAAATTACGGTATTTGCGTAGTTAGCGGAGCGGCTATAGGTACCGATATACATGCTCACGAAGGCGCT
TTTCCAAATACCATCGCAGTCTTTGGAAATGGACTTAATAATATATATCCGGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGACGCATTGGCTCTTAGCGAGTATGAACCTAATACTTTTGCGACTCCTTGGAGTTTTTTAGAAAGAAACAGAA
TAGTCGTATCCCTAAGCGACGCCGTGATCATAGCAGAAGCGGATATTAAAAGCGGATCAATGTCTAGCGCAAGACTCGCT
TTGGATATGGGAATTCCTCTTTTTGTATTGCCTCAAAGGTTTAATGAGAGCAATGGAACAAATGATCTGCTTAGTAAAAA
TAGGGCGAATTTAATAGCCGATTTTGATGAGTTTGCTTCTAAATTCGGAAGTTTAAACAGTGATTTGAGTAAAGACGATG
TTTTGGAATTTATAAAAATAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGCTTTGTATGAATACGAGCTG
GAGGGTAAAATTTCTATAGACGGAGTATATATAAGGATTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L9WQ03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.17

92.157

0.518
  dprA Helicobacter pylori 26695

47.917

94.118

0.451