Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   NL677_RS05565 Genome accession   NZ_CP100646
Coordinates   1093124..1093498 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. fetus strain M20-08756-1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088124..1098498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL677_RS05540 (NL677_05535) tatB 1088787..1089242 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  NL677_RS05545 (NL677_05540) tatC 1089242..1089997 (+) 756 WP_065844321.1 twin-arginine translocase subunit TatC -
  NL677_RS05550 (NL677_05545) queA 1089994..1091013 (+) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NL677_RS05555 (NL677_05550) - 1091023..1092267 (+) 1245 WP_251146929.1 hypothetical protein -
  NL677_RS05560 (NL677_05555) - 1092253..1093116 (-) 864 WP_065844323.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  NL677_RS05565 (NL677_05560) dprB 1093124..1093498 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  NL677_RS05570 (NL677_05565) dprA 1093495..1094262 (-) 768 WP_065843754.1 DNA-processing protein DprA Machinery gene
  NL677_RS05575 (NL677_05570) - 1094246..1094572 (-) 327 WP_394803822.1 divergent polysaccharide deacetylase family protein -
  NL677_RS05580 (NL677_05575) - 1094583..1095332 (-) 750 WP_316376888.1 divergent polysaccharide deacetylase family protein -
  NL677_RS05585 (NL677_05580) ilvC 1095411..1096433 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  NL677_RS05590 (NL677_05585) - 1096579..1097391 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=705936 NL677_RS05565 WP_002849740.1 1093124..1093498(-) (dprB) [Campylobacter fetus subsp. fetus strain M20-08756-1A]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=705936 NL677_RS05565 WP_002849740.1 1093124..1093498(-) (dprB) [Campylobacter fetus subsp. fetus strain M20-08756-1A]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524