Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   NJU99_RS13470 Genome accession   NZ_CP100595
Coordinates   2846450..2846830 (+) Length   126 a.a.
NCBI ID   WP_254576425.1    Uniprot ID   -
Organism   Arcobacter roscoffensis strain ARW1-2F2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2841450..2851830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJU99_RS13435 (NJU99_13435) - 2841491..2841919 (-) 429 WP_254576418.1 A24 family peptidase -
  NJU99_RS13440 (NJU99_13440) - 2841971..2842165 (-) 195 WP_254576419.1 hypothetical protein -
  NJU99_RS13445 (NJU99_13445) gatC 2842540..2842830 (+) 291 WP_254576420.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NJU99_RS13450 (NJU99_13450) - 2842893..2843189 (+) 297 Protein_2617 ArsC/Spx/MgsR family protein -
  NJU99_RS13455 (NJU99_13455) - 2843251..2844615 (-) 1365 WP_254576422.1 3-deoxy-7-phosphoheptulonate synthase class II -
  NJU99_RS13460 (NJU99_13460) - 2844760..2845752 (-) 993 WP_254576423.1 transaldolase -
  NJU99_RS13465 (NJU99_13465) serB 2845764..2846384 (-) 621 WP_254576424.1 phosphoserine phosphatase SerB -
  NJU99_RS13470 (NJU99_13470) dprB 2846450..2846830 (+) 381 WP_254576425.1 Holliday junction resolvase RuvX Machinery gene
  NJU99_RS13475 (NJU99_13475) acpS 2846865..2847215 (-) 351 WP_254576426.1 holo-ACP synthase -
  NJU99_RS13480 (NJU99_13480) - 2847349..2847996 (+) 648 WP_254576427.1 CsgG/HfaB family protein -
  NJU99_RS13485 (NJU99_13485) - 2848010..2848366 (+) 357 WP_254576428.1 DUF4810 domain-containing protein -
  NJU99_RS13490 (NJU99_13490) - 2848366..2849031 (+) 666 WP_254576429.1 GNA1162 family protein -
  NJU99_RS13495 (NJU99_13495) - 2849210..2849662 (+) 453 WP_254576430.1 MarR family transcriptional regulator -
  NJU99_RS13500 (NJU99_13500) - 2849663..2850097 (+) 435 WP_254576431.1 GNAT family N-acetyltransferase -
  NJU99_RS13505 (NJU99_13505) - 2850164..2851123 (+) 960 WP_254576432.1 ABC transporter permease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14400.74 Da        Isoelectric Point: 5.9392

>NTDB_id=705848 NJU99_RS13470 WP_254576425.1 2846450..2846830(+) (dprB) [Arcobacter roscoffensis strain ARW1-2F2]
MKLACIDIGLKRIGVAICVGSDIVTPQEAILRKNRNQASNDVNAFLKEWEIEKLIVGFPSASEDMQKRINHFVKLLELDI
PYEFQEENMSSIEAEDMMKGQIKYKRDGRVDSLAAKIILERYLAKN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=705848 NJU99_RS13470 WP_254576425.1 2846450..2846830(+) (dprB) [Arcobacter roscoffensis strain ARW1-2F2]
TTGAAATTAGCTTGCATTGATATAGGACTTAAAAGAATAGGAGTTGCAATTTGTGTTGGCTCAGATATTGTTACGCCACA
AGAAGCAATATTGCGAAAAAATAGAAATCAAGCCTCAAATGATGTAAATGCTTTTTTAAAAGAGTGGGAAATAGAAAAAT
TAATAGTTGGATTTCCAAGTGCCAGTGAAGATATGCAAAAAAGAATAAACCACTTTGTTAAACTACTAGAACTTGATATA
CCTTATGAATTTCAAGAAGAAAACATGAGTTCAATAGAAGCCGAAGATATGATGAAAGGCCAAATTAAATACAAAAGAGA
TGGAAGAGTTGACTCCCTTGCTGCAAAAATTATACTAGAGAGATATTTAGCAAAGAACTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.855

100

0.508