Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NJU99_RS04845 Genome accession   NZ_CP100595
Coordinates   981918..983768 (-) Length   616 a.a.
NCBI ID   WP_254577599.1    Uniprot ID   -
Organism   Arcobacter roscoffensis strain ARW1-2F2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 976918..988768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJU99_RS04820 (NJU99_04820) - 977092..978873 (+) 1782 WP_254577594.1 YgiQ family radical SAM protein -
  NJU99_RS04825 (NJU99_04825) - 978986..979570 (+) 585 WP_254577595.1 adenylate kinase -
  NJU99_RS04830 (NJU99_04830) - 979570..980325 (+) 756 WP_254577596.1 molybdopterin-binding protein -
  NJU99_RS04835 (NJU99_04835) - 980329..980895 (-) 567 WP_254577597.1 hypothetical protein -
  NJU99_RS04840 (NJU99_04840) - 980892..981914 (-) 1023 WP_254577598.1 alanine racemase -
  NJU99_RS04845 (NJU99_04845) uvrC 981918..983768 (-) 1851 WP_254577599.1 excinuclease ABC subunit UvrC Machinery gene
  NJU99_RS04850 (NJU99_04850) - 983826..985466 (-) 1641 WP_254577600.1 SIR2 family protein -
  NJU99_RS04855 (NJU99_04855) - 985543..986445 (-) 903 WP_254577601.1 hypothetical protein -
  NJU99_RS04860 (NJU99_04860) - 986574..987269 (+) 696 WP_254577602.1 SOS response-associated peptidase -
  NJU99_RS04865 (NJU99_04865) - 987258..988016 (-) 759 WP_254577603.1 phosphotransferase -
  NJU99_RS04870 (NJU99_04870) pnuC 987997..988566 (-) 570 WP_254577604.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 71868.97 Da        Isoelectric Point: 9.0229

>NTDB_id=705844 NJU99_RS04845 WP_254577599.1 981918..983768(-) (uvrC) [Arcobacter roscoffensis strain ARW1-2F2]
MQLEEKLKQLPNDAGVYQYFDKDGHLLYIGKAKVLKNRVKSYFKFTPKLLPSDRLGPRIYKMITEVVSLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIMVDYNELFPRLEITRRVYKGKNIKYFGPYSTGAKDMLDSIYEIVPLVQKKSC
VKGKEACLFHQIKKCHAPCEGKISTADYGKVVEEALDFIYNKAKLISKLEEKMMQYSEEFRFEEAMKLRDRIKTIEKSQI
KSGMDLATNEDLDLFAIKASSKKAVIVRMFIRDGKLASSSHDFVKLDFLEDNSNIDLNEAYKRAIVNYYDNEIPLLPKEI
LTAQEVEDKEEIEEFLKNRFERNISIINPQRGKKKTLLEIALNNCDELLRIESSRNQTTIYDELKNLFKLQTLPYRVESF
DNSHMMGQATVGAMVVWNEELNSFDRKAFRHYNLESKDEYSQMREMLMRRVESFEKNPAPDLWVIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKVDAKAHRAKGAAKDIVHYKDSDGTIRNIKLKTSDQRLQFVQRQRDEAHRFVINFHKKQKRKEDKQ
ISLLQIKGIGEAKVKKLLLYFGEFEKIKNASVEELKEVINEKDANLIHNYFRENGE

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=705844 NJU99_RS04845 WP_254577599.1 981918..983768(-) (uvrC) [Arcobacter roscoffensis strain ARW1-2F2]
ATGCAATTAGAAGAGAAACTTAAACAACTCCCAAACGATGCTGGGGTATATCAATACTTTGATAAAGATGGTCATTTACT
TTATATAGGAAAAGCGAAAGTACTTAAAAATAGAGTTAAATCATACTTTAAATTTACTCCAAAACTTCTTCCATCAGATA
GACTAGGTCCTAGAATTTATAAGATGATTACAGAAGTTGTATCATTAGAATGGATTGTTGTTCCAAATGAGCATGATGCT
TTAATTTTGGAAAACTCTTTAATAAAACAGTTAAAACCTAAATACAATATTCTTCTACGAGATGACAAAACCTATCCATA
TATTATGGTTGATTATAATGAACTTTTTCCAAGACTTGAAATAACAAGAAGAGTTTATAAGGGTAAAAATATCAAATACT
TTGGTCCCTACTCTACAGGTGCAAAAGATATGCTTGACTCTATTTATGAAATAGTTCCACTTGTACAAAAAAAATCATGT
GTAAAAGGAAAAGAAGCTTGTCTTTTCCATCAAATCAAAAAGTGTCATGCTCCTTGTGAAGGTAAAATCTCAACTGCTGA
TTATGGAAAAGTTGTTGAAGAAGCCTTAGATTTTATATATAATAAAGCAAAGCTTATTTCAAAACTAGAAGAAAAAATGA
TGCAATACTCAGAAGAGTTTAGATTTGAAGAGGCTATGAAGCTTAGAGATAGAATAAAAACCATAGAAAAGTCTCAAATT
AAATCAGGAATGGATTTAGCAACAAACGAAGACTTAGACCTATTTGCTATAAAAGCAAGCTCAAAAAAAGCAGTAATAGT
AAGAATGTTCATAAGAGATGGAAAACTAGCCTCATCTTCTCATGATTTTGTAAAGCTTGACTTTTTAGAAGATAATTCAA
ATATAGATTTAAATGAAGCCTATAAAAGAGCAATTGTAAATTATTATGACAATGAAATACCACTTTTACCAAAAGAGATT
TTAACAGCTCAAGAAGTTGAAGATAAAGAAGAGATAGAAGAGTTTTTAAAAAATAGATTTGAAAGAAATATTAGTATCAT
TAATCCTCAAAGAGGAAAGAAAAAGACACTACTTGAAATAGCTTTAAATAACTGTGATGAACTACTTAGAATTGAATCAT
CAAGAAACCAAACTACTATTTATGATGAGTTAAAAAATCTATTTAAGCTACAAACACTCCCTTACAGAGTTGAGTCTTTT
GATAACTCTCATATGATGGGACAAGCTACTGTTGGAGCCATGGTTGTGTGGAATGAAGAGTTAAACTCTTTTGATAGAAA
AGCCTTTAGACACTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAGAGAAATGCTAATGAGAAGAGTTGAAAGTT
TTGAGAAGAACCCTGCGCCTGATTTATGGGTTATTGATGGAGGTGAAACTCTACTAAAACTTGCTTTTGATATAGTGCAA
TCAGTTGGTGTTAACCTTGATATAATTGCTATTGCAAAAGAGAAGGTTGACGCAAAAGCCCACAGAGCAAAAGGTGCAGC
AAAAGATATAGTTCACTATAAAGATAGTGATGGAACAATAAGAAATATAAAACTAAAAACAAGTGACCAAAGACTTCAAT
TTGTTCAAAGACAAAGGGATGAAGCCCATAGATTTGTAATCAACTTTCATAAAAAACAAAAAAGAAAAGAAGATAAACAA
ATTTCACTACTTCAAATAAAAGGTATAGGTGAGGCAAAAGTTAAAAAACTTCTTTTATACTTTGGGGAGTTTGAAAAGAT
TAAAAATGCATCAGTTGAAGAACTAAAAGAAGTTATAAATGAAAAAGATGCAAACTTAATACATAATTATTTTAGAGAAA
ACGGGGAATAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(386-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.997

97.727

0.498