Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGCSD_RS03540 Genome accession   NZ_AP018726
Coordinates   680621..682423 (+) Length   600 a.a.
NCBI ID   WP_129555469.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 675621..687423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS03520 (FGCSD_0634) nagB 676751..677464 (+) 714 WP_129555465.1 glucosamine-6-phosphate deaminase -
  FGCSD_RS03525 (FGCSD_0635) - 677568..678284 (+) 717 WP_129555466.1 pseudouridine synthase -
  FGCSD_RS03530 (FGCSD_0636) - 678376..679536 (+) 1161 WP_129555467.1 MFS transporter -
  FGCSD_RS03535 (FGCSD_0637) - 679648..680610 (+) 963 WP_129555468.1 competence protein CoiA family protein -
  FGCSD_RS03540 (FGCSD_0638) pepF 680621..682423 (+) 1803 WP_129555469.1 oligoendopeptidase F Regulator
  FGCSD_RS03545 (FGCSD_0639) - 682610..683164 (+) 555 WP_129555470.1 NADPH-dependent FMN reductase -
  FGCSD_RS03550 (FGCSD_0640) - 683287..683829 (+) 543 WP_129555471.1 GNAT family N-acetyltransferase -
  FGCSD_RS03555 (FGCSD_0641) - 683829..684452 (+) 624 WP_129555472.1 HAD-IA family hydrolase -
  FGCSD_RS03560 (FGCSD_0642) - 684787..685998 (+) 1212 WP_129555473.1 OFA family MFS transporter -
  FGCSD_RS03565 (FGCSD_0643) - 686050..686757 (+) 708 WP_129555474.1 O-methyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69254.04 Da        Isoelectric Point: 4.7445

>NTDB_id=70580 FGCSD_RS03540 WP_129555469.1 680621..682423(+) (pepF) [Streptococcus dysgalactiae strain Kdys0611]
MTDNRSHLEEKYTWDLSTIFGTDKDWETEVSGLASEIDAARDFAGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLAETPDLKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYAELNEKHYGLRKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEALVAKGVHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=70580 FGCSD_RS03540 WP_129555469.1 680621..682423(+) (pepF) [Streptococcus dysgalactiae strain Kdys0611]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGGAACAGATAAGGATTGGGA
AACTGAAGTGAGTGGCTTAGCTAGTGAAATTGACGCGGCTAGGGATTTTGCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTAGCTCGTCGTGTTGAGAAAGTCTATGTCTATGCTCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCGGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGCGGAAACTCCTGATTTAAAAAGGT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGCCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAACGGTGCTGAAGAAACCTTTAGCATTCTTGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTCATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTCCAACATACTTATGCTAAAACCTTACAAACAAATGTTAAGGTGCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACGGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTC
TAGATGAATTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGATCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCATCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCAGGTGGTTCCTACGACACCAACGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGATAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCTTAGCAGAAATTGCATCTACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTTCAAGATGAGAAAGAACGCTTTGCCATTTTAAACCATTACCTTGACGGTTTCCGTGGTACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACACGCGATTCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGAGTTGAATGAAAAGCATTATGGGTTGAGAAAAGACGATAATCATTTTATTCAATATGAGTG
GGCACGTATTCCTCATTTCTATTACAATTATTATGTTTATCAGTATGCTACAGGCTTTGCAGCAGCAAGCTATTTAGCCG
ATAAGATTGTGCATGGCACACAAGACGATATTGATCATTACTTGACCTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTCATCGCTAAAGCGGGTGTTGATATGGCAAAAGGTGACTATCTTGAGGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAAGGAGTTCATCGCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717

Multiple sequence alignment