Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PF555_RS09025 Genome accession   NZ_CP115645
Coordinates   1926601..1927236 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00371     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1921601..1932236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF555_RS09000 (PF555_09000) - 1921657..1922637 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  PF555_RS09005 (PF555_09005) kdsB 1922649..1923410 (-) 762 WP_000680694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PF555_RS09010 (PF555_09010) lpxK 1923420..1924430 (-) 1011 WP_000050466.1 tetraacyldisaccharide 4'-kinase -
  PF555_RS09015 (PF555_09015) msbA 1924433..1926160 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  PF555_RS09020 (PF555_09020) - 1926157..1926585 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  PF555_RS09025 (PF555_09025) exbB 1926601..1927236 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PF555_RS09030 (PF555_09030) - 1927286..1928173 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  PF555_RS09035 (PF555_09035) - 1928170..1928952 (-) 783 WP_000057212.1 ParA family protein -
  PF555_RS09040 (PF555_09040) rsmG 1928974..1929606 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  PF555_RS09045 (PF555_09045) murU 1929694..1930383 (-) 690 WP_000646461.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  PF555_RS09050 (PF555_09050) - 1930383..1931396 (-) 1014 WP_024432223.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=705748 PF555_RS09025 WP_000264035.1 1926601..1927236(-) (exbB) [Acinetobacter baumannii strain 2022CK-00371]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=705748 PF555_RS09025 WP_000264035.1 1926601..1927236(-) (exbB) [Acinetobacter baumannii strain 2022CK-00371]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393