Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NLZ09_RS13780 Genome accession   NZ_CP100525
Coordinates   2816168..2816797 (-) Length   209 a.a.
NCBI ID   WP_072712306.1    Uniprot ID   -
Organism   Escherichia coli strain LH13-b     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2811168..2821797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ09_RS13765 (NLZ09_13765) helD 2811410..2813464 (-) 2055 WP_001295354.1 DNA helicase IV -
  NLZ09_RS13770 (NLZ09_13770) yccF 2813587..2814033 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NLZ09_RS13775 (NLZ09_13775) yccS 2814043..2816205 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NLZ09_RS13780 (NLZ09_13780) sxy/tfoX 2816168..2816797 (-) 630 WP_072712306.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NLZ09_RS13785 (NLZ09_13785) sulA 2817016..2817525 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NLZ09_RS13790 (NLZ09_13790) ompA 2817882..2818922 (+) 1041 WP_000750416.1 porin OmpA -
  NLZ09_RS13795 (NLZ09_13795) matP 2818998..2819450 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NLZ09_RS13800 (NLZ09_13800) ycbZ 2819636..2821396 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=705735 NLZ09_RS13780 WP_072712306.1 2816168..2816797(-) (sxy/tfoX) [Escherichia coli strain LH13-b]
MKSLSYKRIYKSQQYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=705735 NLZ09_RS13780 WP_072712306.1 2816168..2816797(-) (sxy/tfoX) [Escherichia coli strain LH13-b]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAACAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995