Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NLZ11_RS09405 Genome accession   NZ_CP100515
Coordinates   1959668..1960264 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LH35-d     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1954668..1965264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ11_RS09385 (NLZ11_09385) - 1954860..1956617 (-) 1758 WP_016529118.1 Lon protease family protein -
  NLZ11_RS09390 (NLZ11_09390) matP 1956803..1957255 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NLZ11_RS09395 (NLZ11_09395) ompA 1957387..1958457 (-) 1071 WP_002898408.1 porin OmpA -
  NLZ11_RS09400 (NLZ11_09400) sulA 1958810..1959319 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  NLZ11_RS09405 (NLZ11_09405) sxy/tfoX 1959668..1960264 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  NLZ11_RS09410 (NLZ11_09410) yccS 1960278..1962413 (-) 2136 WP_002898422.1 YccS family putative transporter -
  NLZ11_RS09415 (NLZ11_09415) - 1962431..1962877 (-) 447 WP_002898425.1 YccF domain-containing protein -
  NLZ11_RS09420 (NLZ11_09420) helD 1963002..1965056 (+) 2055 WP_159307954.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=705679 NLZ11_RS09405 WP_004179217.1 1959668..1960264(+) (sxy/tfoX) [Klebsiella pneumoniae strain LH35-d]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=705679 NLZ11_RS09405 WP_004179217.1 1959668..1960264(+) (sxy/tfoX) [Klebsiella pneumoniae strain LH35-d]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51