Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NLZ12_RS09385 Genome accession   NZ_CP100511
Coordinates   1957865..1958461 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LH50-a     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952865..1963461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ12_RS09365 (NLZ12_09365) - 1953057..1954814 (-) 1758 WP_016529118.1 Lon protease family protein -
  NLZ12_RS09370 (NLZ12_09370) matP 1955000..1955452 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NLZ12_RS09375 (NLZ12_09375) ompA 1955584..1956654 (-) 1071 WP_002898408.1 porin OmpA -
  NLZ12_RS09380 (NLZ12_09380) sulA 1957007..1957516 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  NLZ12_RS09385 (NLZ12_09385) sxy/tfoX 1957865..1958461 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  NLZ12_RS09390 (NLZ12_09390) yccS 1958475..1960610 (-) 2136 WP_002898422.1 YccS family putative transporter -
  NLZ12_RS09395 (NLZ12_09395) - 1960628..1961074 (-) 447 WP_002898425.1 YccF domain-containing protein -
  NLZ12_RS09400 (NLZ12_09400) helD 1961199..1963253 (+) 2055 WP_159307954.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=705655 NLZ12_RS09385 WP_004179217.1 1957865..1958461(+) (sxy/tfoX) [Klebsiella pneumoniae strain LH50-a]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=705655 NLZ12_RS09385 WP_004179217.1 1957865..1958461(+) (sxy/tfoX) [Klebsiella pneumoniae strain LH50-a]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51