Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NLZ13_RS16890 Genome accession   NZ_CP100500
Coordinates   3393677..3394306 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LH50-c     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3388677..3399306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ13_RS16875 (NLZ13_16875) helD 3388919..3390973 (-) 2055 WP_021577221.1 DNA helicase IV -
  NLZ13_RS16880 (NLZ13_16880) yccF 3391096..3391542 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NLZ13_RS16885 (NLZ13_16885) yccS 3391552..3393714 (+) 2163 WP_000323868.1 YccS family putative transporter -
  NLZ13_RS16890 (NLZ13_16890) sxy/tfoX 3393677..3394306 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NLZ13_RS16895 (NLZ13_16895) sulA 3394525..3395034 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  NLZ13_RS16900 (NLZ13_16900) ompA 3395391..3396446 (+) 1056 WP_000750414.1 porin OmpA -
  NLZ13_RS16905 (NLZ13_16905) matP 3396522..3396974 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NLZ13_RS16910 (NLZ13_16910) ycbZ 3397160..3398920 (+) 1761 WP_112037676.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=705641 NLZ13_RS16890 WP_000839153.1 3393677..3394306(-) (sxy/tfoX) [Escherichia coli strain LH50-c]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=705641 NLZ13_RS16890 WP_000839153.1 3393677..3394306(-) (sxy/tfoX) [Escherichia coli strain LH50-c]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1