Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NLZ15_RS19695 Genome accession   NZ_CP100494
Coordinates   4140005..4141438 (+) Length   477 a.a.
NCBI ID   WP_125294227.1    Uniprot ID   A0A3R9F1P7
Organism   Atlantibacter subterranea strain LH84-a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4135005..4146438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ15_RS19665 (NLZ15_19665) - 4135446..4136423 (+) 978 WP_125294233.1 calcium/sodium antiporter -
  NLZ15_RS19670 (NLZ15_19670) kdsD 4136437..4137423 (+) 987 WP_125294232.1 arabinose-5-phosphate isomerase KdsD -
  NLZ15_RS19675 (NLZ15_19675) kdsC 4137441..4138007 (+) 567 WP_125294231.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NLZ15_RS19680 (NLZ15_19680) lptC 4138004..4138579 (+) 576 WP_125294230.1 LPS export ABC transporter periplasmic protein LptC -
  NLZ15_RS19685 (NLZ15_19685) lptA 4138548..4139105 (+) 558 WP_144131278.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  NLZ15_RS19690 (NLZ15_19690) lptB 4139112..4139837 (+) 726 WP_125294228.1 LPS export ABC transporter ATP-binding protein -
  NLZ15_RS19695 (NLZ15_19695) rpoN/rpoN1 4140005..4141438 (+) 1434 WP_125294227.1 RNA polymerase factor sigma-54 Machinery gene
  NLZ15_RS19700 (NLZ15_19700) hpf 4141461..4141748 (+) 288 WP_125294226.1 ribosome hibernation promoting factor -
  NLZ15_RS19705 (NLZ15_19705) ptsN 4141832..4142311 (+) 480 WP_125294225.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NLZ15_RS19710 (NLZ15_19710) rapZ 4142372..4143226 (+) 855 WP_125294224.1 RNase adapter RapZ -
  NLZ15_RS19715 (NLZ15_19715) npr 4143223..4143495 (+) 273 WP_125294223.1 PTS phosphocarrier protein NPr -
  NLZ15_RS19720 (NLZ15_19720) mtgA 4143511..4144239 (-) 729 WP_151603317.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  NLZ15_RS19725 (NLZ15_19725) elbB 4144236..4144889 (-) 654 WP_254487192.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53984.55 Da        Isoelectric Point: 4.3474

>NTDB_id=705598 NLZ15_RS19695 WP_125294227.1 4140005..4141438(+) (rpoN/rpoN1) [Atlantibacter subterranea strain LH84-a]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDFHDEIDTQESRDTETLDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLED
ILESVGDDETDIEEVEAVLKRIQRFDPVGVAARDLRDCLLIQLSQYAKDTPWLEESRQIVSEHLDLLANHDFRTLMRVTR
LKEDVLKEAVNFIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGVWTVELNADSIPRLKINQHYASMGSSARNEADGQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAGENPAKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=705598 NLZ15_RS19695 WP_125294227.1 4140005..4141438(+) (rpoN/rpoN1) [Atlantibacter subterranea strain LH84-a]
ATGAAGCAAGGTTTGCAACTGAGGCTGAGCCAACAGCTTGCCATGACGCCGCAACTGCAACAGGCGATTCGCTTGCTGCA
GCTGTCTACGTTAGAACTCCAGCAGGAGCTGCAACAGGCGCTGGACAGCAACCCGTTGCTTGAGCAAACCGACTTTCATG
ATGAAATAGACACCCAGGAATCCCGTGATACTGAAACGCTGGATACCGCCGACGCACTCGAACAAAAAGAGATGCCGGAT
GAGCTGCCGTTAGATGCCAGCTGGGACGAAATCTACACTGCCGGCACCCCGTCAGGGAACGGCGTGGATTATCAGGATGA
CGAACTGCCCGTCTATCAGGGCGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTTGAACTGACGCCGTTTT
CCGATACCGATCGCGCAATTGCCACCTCTATCGTCGACGCCGTAGACGACACGGGCTATCTCACCGTGTCGCTGGAAGAT
ATCCTGGAAAGCGTTGGCGATGACGAAACCGATATTGAAGAAGTCGAAGCGGTGCTTAAGCGCATCCAGCGGTTTGATCC
TGTTGGCGTTGCCGCCCGCGATTTGCGCGACTGCCTGTTGATCCAGCTATCGCAATACGCGAAAGACACCCCCTGGCTGG
AAGAGTCGCGGCAGATCGTCAGCGAGCATCTCGATCTGCTGGCGAATCACGATTTCCGTACGCTGATGCGCGTCACGCGG
CTCAAAGAAGACGTGCTCAAAGAAGCGGTCAATTTTATCCAGTCCCTCGATCCCCGCCCCGGCCAGTCAATTCAAACCAG
CGAACCCGAGTATGTGATCCCCGATGTGCTGGTCCGTAAACATAACGGCGTCTGGACGGTGGAACTGAACGCTGACAGCA
TTCCCCGATTAAAAATCAATCAGCATTATGCTTCAATGGGTAGCAGCGCGCGTAACGAAGCCGACGGCCAGTTTATCCGC
AGCAACCTTCAGGAAGCGCGCTGGCTGATTAAAAGCCTGGAAAGCCGCAACGATACGCTGTTACGCGTCAGCCGCTGCAT
AGTGGAACAGCAGCAGGCTTTTTTCGAACAGGGCGAAGAATACATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCACGAATCGACCATTTCCCGTGTCACTACCCAAAAATATTTGCATAGCCCGCGCGGCATATTTGAACTGAAA
TATTTCTTCTCCAGCCATGTTAATACCGAAGGCGGCGGCGAAGCCTCCTCGACCGCCATTCGGGCGCTGGTTAAGAAATT
GATTGCCGGAGAAAATCCGGCAAAACCCCTGAGCGACAGTAAACTGACTTCTATGTTGTCTGAACAGGGCATCATGGTGG
CTCGTCGTACCGTCGCCAAATATCGAGAGTCTCTGTCCATTCCGCCGTCGAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9F1P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.747

100

0.482