Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PF550_RS01080 Genome accession   NZ_CP115641
Coordinates   216612..217553 (+) Length   313 a.a.
NCBI ID   WP_001159457.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211612..222553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS01070 (PF550_01070) basA 212034..213881 (+) 1848 WP_000910257.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -
  PF550_RS01075 (PF550_01075) basB 213952..215982 (-) 2031 WP_000939847.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  PF550_RS01080 (PF550_01080) ceuB 216612..217553 (+) 942 WP_001159457.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  PF550_RS01085 (PF550_01085) bauC 217553..218500 (+) 948 WP_001223277.1 ferric acinetobactin ABC transporter permease subunit BauC -
  PF550_RS01090 (PF550_01090) bauE 218497..219267 (+) 771 WP_000582115.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  PF550_RS01095 (PF550_01095) bauB 219274..220242 (+) 969 WP_001104128.1 siderophore-binding periplasmic lipoprotein BauB -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33979.03 Da        Isoelectric Point: 8.4665

>NTDB_id=705567 PF550_RS01080 WP_001159457.1 216612..217553(+) (ceuB) [Acinetobacter baumannii strain 2022CK-00251]
MQFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=705567 PF550_RS01080 WP_001159457.1 216612..217553(+) (ceuB) [Acinetobacter baumannii strain 2022CK-00251]
ATGCAATTCGGCTTATTCTGTATTTTTATCATTTTATGTATTTGTTCGTTATTGCTCGGGGCTGAGCAAATACAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTAATTACTATTGTGCTTA
CCGGTATCGGCTTGGCGGTATGTGGTGTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACATCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCATTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGGCGGATCCGTTTTAGAAATACGGTTTTAG
TACCGGTTATTGGCTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTCGCACACCGCTTTACCGTAATTGGTATGGGGGAAGAGATGGCTTCTAGTTTGGGACTCA
GTTATGCAGCTATAGCCGCCATTGGTTTGATACTGGTTGCCATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTCCCCAATTTAGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCGATTGTGGC
TTTGGGTGGGGCATCTCTATTACTGATTTGTGACATTCTTGGCCGCTCAATCATTTACCCATTTGAAGTGCCGATCGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419