Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NLK52_RS11925 Genome accession   NZ_CP100436
Coordinates   2338742..2339545 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain MEC_B298     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2333742..2344545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS11900 (NLK52_11900) glpQB 2334885..2335616 (-) 732 WP_015384062.1 glycerophosphodiester phosphodiesterase -
  NLK52_RS11905 (NLK52_11905) yqiI 2335689..2336309 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  NLK52_RS11910 (NLK52_11910) - 2336329..2336625 (-) 297 WP_015384064.1 hypothetical protein -
  NLK52_RS11915 (NLK52_11915) - 2336933..2337085 (+) 153 WP_015384065.1 hypothetical protein -
  NLK52_RS11920 (NLK52_11920) yqiG 2337158..2338276 (+) 1119 WP_015483421.1 NADH-dependent flavin oxidoreductase -
  NLK52_RS11925 (NLK52_11925) spo0A 2338742..2339545 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NLK52_RS11930 (NLK52_11930) spoIVB 2339810..2341090 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  NLK52_RS11935 (NLK52_11935) recN 2341265..2342995 (-) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  NLK52_RS11940 (NLK52_11940) argR 2343032..2343481 (-) 450 WP_015384067.1 arginine repressor ArgR -
  NLK52_RS11945 (NLK52_11945) yqxC 2343579..2344424 (-) 846 WP_015384068.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=705429 NLK52_RS11925 WP_003226427.1 2338742..2339545(-) (spo0A) [Bacillus subtilis strain MEC_B298]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=705429 NLK52_RS11925 WP_003226427.1 2338742..2339545(-) (spo0A) [Bacillus subtilis strain MEC_B298]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTCAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1