Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NLK52_RS10945 Genome accession   NZ_CP100436
Coordinates   2162847..2163467 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain MEC_B298     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157847..2168467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS10905 (NLK52_10905) ptsA 2158980..2159486 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  NLK52_RS10910 (NLK52_10910) ypqA 2159624..2160043 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  NLK52_RS10915 (NLK52_10915) sppG 2160064..2160441 (-) 378 WP_014477159.1 YppG family protein -
  NLK52_RS10920 (NLK52_10920) yppF 2160628..2160816 (+) 189 WP_003230690.1 YppF family protein -
  NLK52_RS10925 (NLK52_10925) yppE 2160855..2161226 (-) 372 WP_015483369.1 YppE family protein -
  NLK52_RS10930 (NLK52_10930) yppD 2161272..2161517 (-) 246 WP_004398488.1 YppD family protein -
  NLK52_RS10935 (NLK52_10935) sspM 2161715..2161819 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NLK52_RS10940 (NLK52_10940) yppC 2161844..2162806 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  NLK52_RS10945 (NLK52_10945) recU 2162847..2163467 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NLK52_RS10950 (NLK52_10950) ponA 2163489..2166239 (+) 2751 WP_015383947.1 transglycosylase domain-containing protein -
  NLK52_RS10955 (NLK52_10955) ypoC 2166315..2166809 (-) 495 WP_015383948.1 YpoC family protein -
  NLK52_RS10960 (NLK52_10960) nth 2166806..2167465 (-) 660 WP_015483371.1 endonuclease III -
  NLK52_RS10965 (NLK52_10965) dnaD 2167484..2168182 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=705428 NLK52_RS10945 WP_004399067.1 2162847..2163467(+) (recU) [Bacillus subtilis strain MEC_B298]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=705428 NLK52_RS10945 WP_004399067.1 2162847..2163467(+) (recU) [Bacillus subtilis strain MEC_B298]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1