Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NLK52_RS07770 Genome accession   NZ_CP100436
Coordinates   1481222..1481500 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain MEC_B298     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476222..1486500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS07750 (NLK52_07750) panEB 1477409..1478320 (+) 912 Protein_1472 ketopantoate reductase family protein -
  NLK52_RS07755 (NLK52_07755) ampS 1478354..1479586 (-) 1233 WP_015383558.1 aminopeptidase -
  NLK52_RS07760 (NLK52_07760) ykpC 1479696..1479830 (-) 135 WP_003238865.1 protein YkpC -
  NLK52_RS07765 (NLK52_07765) mreBH 1479931..1480938 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  NLK52_RS07770 (NLK52_07770) abrB 1481222..1481500 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NLK52_RS07775 (NLK52_07775) kinC 1481690..1482976 (+) 1287 WP_015383559.1 two-component sensor histidine kinase KinC -
  NLK52_RS07780 (NLK52_07780) ykqA 1482992..1483819 (+) 828 WP_015483181.1 gamma-glutamylcyclotransferase -
  NLK52_RS07785 (NLK52_07785) ktrC 1483882..1484547 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NLK52_RS07790 (NLK52_07790) ade 1484703..1486436 (+) 1734 WP_015383561.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=705424 NLK52_RS07770 WP_003244728.1 1481222..1481500(+) (abrB) [Bacillus subtilis strain MEC_B298]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=705424 NLK52_RS07770 WP_003244728.1 1481222..1481500(+) (abrB) [Bacillus subtilis strain MEC_B298]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576