Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NLK52_RS05620 Genome accession   NZ_CP100436
Coordinates   1086627..1087205 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain MEC_B298     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081627..1092205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS05600 (NLK52_05600) hemAT 1082138..1083436 (-) 1299 WP_015483047.1 heme-based aerotactic transducer HemAT -
  NLK52_RS05605 (NLK52_05605) comW 1083575..1085104 (-) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  NLK52_RS05610 (NLK52_05610) yhxC 1085216..1086073 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  NLK52_RS05615 (NLK52_05615) yhzC 1086101..1086334 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NLK52_RS05620 (NLK52_05620) comK 1086627..1087205 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  NLK52_RS05625 (NLK52_05625) yhxD 1087252..1088151 (-) 900 WP_015483051.1 SDR family oxidoreductase -
  NLK52_RS05630 (NLK52_05630) yhjA 1088369..1088638 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  NLK52_RS05635 (NLK52_05635) yhjB 1088682..1090151 (-) 1470 WP_015383277.1 sodium:solute symporter -
  NLK52_RS05640 (NLK52_05640) yhjC 1090148..1090348 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NLK52_RS05645 (NLK52_05645) - 1090547..1090918 (-) 372 WP_015383278.1 hypothetical protein -
  NLK52_RS05650 (NLK52_05650) yhjE 1091070..1091693 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  NLK52_RS05655 (NLK52_05655) lepB 1091695..1092201 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=705410 NLK52_RS05620 WP_015483050.1 1086627..1087205(+) (comK) [Bacillus subtilis strain MEC_B298]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=705410 NLK52_RS05620 WP_015483050.1 1086627..1087205(+) (comK) [Bacillus subtilis strain MEC_B298]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99