Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NLY75_RS10560 Genome accession   NZ_CP100432
Coordinates   2091308..2092675 (-) Length   455 a.a.
NCBI ID   WP_024383973.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2091308..2102952 2091308..2092675 within 0


Gene organization within MGE regions


Location: 2091308..2102952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS10560 (NLY75_10560) radA 2091308..2092675 (-) 1368 WP_024383973.1 DNA repair protein RadA Machinery gene
  NLY75_RS10565 (NLY75_10565) - 2092682..2093214 (-) 533 Protein_2046 histidine phosphatase family protein -
  NLY75_RS10570 (NLY75_10570) - 2093221..2093664 (-) 444 WP_023371714.1 dUTP diphosphatase -
  NLY75_RS10575 (NLY75_10575) - 2093766..2095550 (-) 1785 WP_023371716.1 ABC transporter ATP-binding protein -
  NLY75_RS10580 (NLY75_10580) - 2095551..2097257 (-) 1707 WP_023371717.1 ABC transporter ATP-binding protein -
  NLY75_RS10585 (NLY75_10585) - 2097250..2097699 (-) 450 WP_012027921.1 MarR family winged helix-turn-helix transcriptional regulator -
  NLY75_RS10590 (NLY75_10590) - 2097921..2098937 (+) 1017 WP_023371719.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NLY75_RS10595 (NLY75_10595) galU 2098953..2099855 (+) 903 WP_023371721.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NLY75_RS10600 (NLY75_10600) - 2099873..2100550 (-) 678 WP_023371723.1 rhomboid family intramembrane serine protease -
  NLY75_RS10605 (NLY75_10605) - 2100534..2101076 (-) 543 Protein_2054 5-formyltetrahydrofolate cyclo-ligase -
  NLY75_RS10610 (NLY75_10610) - 2101117..2102244 (-) 1128 WP_023371725.1 N-acetyldiaminopimelate deacetylase -
  NLY75_RS10615 (NLY75_10615) dapD 2102254..2102952 (-) 699 WP_023371727.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49872.37 Da        Isoelectric Point: 5.8779

>NTDB_id=705336 NLY75_RS10560 WP_024383973.1 2091308..2092675(-) (radA) [Streptococcus suis T15]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLDEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=705336 NLY75_RS10560 WP_024383973.1 2091308..2092675(-) (radA) [Streptococcus suis T15]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCTAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCGATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGCGGCGTGGTGCCGGGAAGTCTGGTCCTGATCGGAGGTGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACAATTGGCACGGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCCATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTCATCGTCG
GCCACATGACCAAGGAAGGTACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAGGGG
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGTACCCGCCCCATTCTTGCGGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGATTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACCACCATTGGTGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624