Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NLY75_RS08925 Genome accession   NZ_CP100432
Coordinates   1745041..1746816 (-) Length   591 a.a.
NCBI ID   WP_024383827.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740041..1751816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS08900 (NLY75_08900) - 1740127..1740549 (+) 423 WP_012027608.1 membrane protein -
  NLY75_RS08905 (NLY75_08905) - 1740539..1742338 (+) 1800 WP_023371259.1 acyltransferase family protein -
  NLY75_RS08910 (NLY75_08910) - 1742550..1743203 (-) 654 WP_023371263.1 phosphatase PAP2 family protein -
  NLY75_RS08915 (NLY75_08915) - 1743228..1743785 (-) 558 WP_023371265.1 ECF transporter S component -
  NLY75_RS08920 (NLY75_08920) - 1744108..1744653 (-) 546 WP_014736238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  NLY75_RS08925 (NLY75_08925) oppA 1745041..1746816 (-) 1776 WP_024383827.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NLY75_RS08930 (NLY75_08930) yidD 1747308..1747547 (-) 240 WP_024383828.1 membrane protein insertion efficiency factor YidD -
  NLY75_RS08935 (NLY75_08935) - 1747547..1748278 (-) 732 WP_002939235.1 pseudouridine synthase -
  NLY75_RS08940 (NLY75_08940) scpB 1748268..1748837 (-) 570 WP_023371271.1 SMC-Scp complex subunit ScpB -
  NLY75_RS08945 (NLY75_08945) - 1748821..1749540 (-) 720 WP_002942755.1 segregation/condensation protein A -
  NLY75_RS08950 (NLY75_08950) xerD 1749540..1750271 (-) 732 WP_023371273.1 site-specific tyrosine recombinase XerD -
  NLY75_RS08955 (NLY75_08955) cbpB 1750268..1750726 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  NLY75_RS08960 (NLY75_08960) - 1750723..1751250 (-) 528 WP_023371275.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65499.21 Da        Isoelectric Point: 4.2794

>NTDB_id=705328 NLY75_RS08925 WP_024383827.1 1745041..1746816(-) (oppA) [Streptococcus suis T15]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFNSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPYYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=705328 NLY75_RS08925 WP_024383827.1 1745041..1746816(-) (oppA) [Streptococcus suis T15]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGATGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTGGCTAGTCCATACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAGGTTGATGACTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTTAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTACGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCTAATATTACTTTACTAGGTAGTCTAGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGATTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGCAAACCGCTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAAAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.488

100

0.658