Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NLY75_RS03765 Genome accession   NZ_CP100432
Coordinates   741147..742949 (+) Length   600 a.a.
NCBI ID   WP_023369833.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 736147..747949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS03750 (NLY75_03750) - 737160..737753 (-) 594 WP_002938116.1 DUF1361 domain-containing protein -
  NLY75_RS03755 (NLY75_03755) metG 737909..739912 (+) 2004 WP_023369829.1 methionine--tRNA ligase -
  NLY75_RS03760 (NLY75_03760) coiA 739976..740917 (+) 942 WP_023369831.1 competence protein CoiA Machinery gene
  NLY75_RS03765 (NLY75_03765) pepF 741147..742949 (+) 1803 WP_023369833.1 oligoendopeptidase F Regulator
  NLY75_RS03770 (NLY75_03770) - 742951..743391 (+) 441 WP_002938105.1 hypothetical protein -
  NLY75_RS03775 (NLY75_03775) - 743407..743955 (+) 549 WP_002938103.1 DUF6630 family protein -
  NLY75_RS03780 (NLY75_03780) - 744041..744760 (+) 720 WP_009910106.1 O-methyltransferase -
  NLY75_RS03785 (NLY75_03785) prsA 744821..745822 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  NLY75_RS03790 (NLY75_03790) - 746089..746574 (+) 486 WP_023369835.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69230.49 Da        Isoelectric Point: 4.5800

>NTDB_id=705316 NLY75_RS03765 WP_023369833.1 741147..742949(+) (pepF) [Streptococcus suis T15]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEKLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLVANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSTIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=705316 NLY75_RS03765 WP_023369833.1 741147..742949(+) (pepF) [Streptococcus suis T15]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACCGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTCGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAATGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAAGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGAAATTGGAAGCCTTTAAAGTAGAAGAGCCGGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCAGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCGGCGACC
AGCGAAATTTTCGAATCACCAGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CCTATGAAGCTATGTACGGTACTTATGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACTTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGTAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCATCGTTACATCAATTTGCGTAAGAAGCTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTACTATCGTAAAAGAAGCCTTCGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTACAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAACGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCTGCATCAGCTCTTGCAA
ACAAGATTGTCAACGGCAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697