Detailed information
Bioinformatically predicted
Overview
| Name | treR | Type | Regulator |
| Locus tag | NLY75_RS01230 | Genome accession | NZ_CP100432 |
| Coordinates | 218432..219145 (+) | Length | 237 a.a. |
| NCBI ID | WP_012774930.1 | Uniprot ID | A0A142UPI2 |
| Organism | Streptococcus suis T15 | ||
| Function | regulate expression of competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 175123..220136 | 218432..219145 | within | 0 |
Gene organization within MGE regions
Location: 175123..220136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLY75_RS01040 (NLY75_01040) | - | 175320..177587 (-) | 2268 | WP_023369163.1 | Xaa-Pro dipeptidyl-peptidase | - |
| NLY75_RS01045 (NLY75_01045) | - | 177769..178503 (+) | 735 | WP_023369165.1 | CppA N-terminal domain-containing protein | - |
| NLY75_RS01050 (NLY75_01050) | - | 178500..179441 (+) | 942 | WP_023369167.1 | serine hydrolase domain-containing protein | - |
| NLY75_RS01055 (NLY75_01055) | - | 179438..179989 (+) | 552 | WP_023369169.1 | DUF1697 domain-containing protein | - |
| NLY75_RS01060 (NLY75_01060) | - | 180071..180214 (+) | 144 | WP_226315762.1 | LysM domain-containing protein | - |
| NLY75_RS01065 (NLY75_01065) | - | 180204..180863 (+) | 660 | WP_226315761.1 | CHAP domain-containing protein | - |
| NLY75_RS01070 (NLY75_01070) | pflB | 181046..183391 (-) | 2346 | WP_023369171.1 | formate C-acetyltransferase | - |
| NLY75_RS01075 (NLY75_01075) | dinB | 183707..184774 (+) | 1068 | WP_014637367.1 | DNA polymerase IV | - |
| NLY75_RS01080 (NLY75_01080) | - | 184817..185236 (+) | 420 | WP_015646348.1 | Rrf2 family transcriptional regulator | - |
| NLY75_RS01085 (NLY75_01085) | - | 185475..186101 (+) | 627 | WP_002935982.1 | NAD(P)-dependent oxidoreductase | - |
| NLY75_RS01090 (NLY75_01090) | - | 186207..186527 (+) | 321 | WP_023369020.1 | transposase | - |
| NLY75_RS01095 (NLY75_01095) | - | 186551..187411 (+) | 861 | WP_194717471.1 | IS3 family transposase | - |
| NLY75_RS01100 (NLY75_01100) | - | 187516..188436 (+) | 921 | WP_011922588.1 | 1-phosphofructokinase family hexose kinase | - |
| NLY75_RS01105 (NLY75_01105) | - | 188484..189122 (+) | 639 | WP_014636205.1 | endonuclease III domain-containing protein | - |
| NLY75_RS01110 (NLY75_01110) | - | 189405..190604 (-) | 1200 | WP_012774923.1 | ROK family protein | - |
| NLY75_RS01115 (NLY75_01115) | - | 190797..192125 (+) | 1329 | WP_012774924.1 | PTS sugar transporter subunit IIC | - |
| NLY75_RS01120 (NLY75_01120) | - | 192130..194016 (+) | 1887 | WP_012774925.1 | DUF4838 domain-containing protein | - |
| NLY75_RS01125 (NLY75_01125) | - | 194136..194372 (+) | 237 | WP_226315759.1 | hypothetical protein | - |
| NLY75_RS01130 (NLY75_01130) | - | 194345..197851 (+) | 3507 | WP_023369175.1 | right-handed parallel beta-helix repeat-containing protein | - |
| NLY75_RS01135 (NLY75_01135) | - | 197870..198631 (+) | 762 | WP_011921800.1 | hypothetical protein | - |
| NLY75_RS01140 (NLY75_01140) | - | 198848..199612 (+) | 765 | WP_024384037.1 | ABC transporter permease | - |
| NLY75_RS01145 (NLY75_01145) | - | 199597..200379 (+) | 783 | WP_012775424.1 | ABC transporter ATP-binding protein | - |
| NLY75_RS01150 (NLY75_01150) | - | 200418..201449 (+) | 1032 | WP_011921803.1 | ABC transporter substrate-binding protein | - |
| NLY75_RS01155 (NLY75_01155) | - | 201543..202352 (+) | 810 | WP_023369178.1 | 6-phosphogluconolactonase | - |
| NLY75_RS11400 | - | 202529..204604 (+) | 2076 | Protein_195 | heavy metal translocating P-type ATPase | - |
| NLY75_RS01175 (NLY75_01175) | - | 204643..207132 (-) | 2490 | WP_012774926.1 | ATP-dependent RecD-like DNA helicase | - |
| NLY75_RS01180 (NLY75_01180) | - | 207206..208066 (-) | 861 | WP_194717471.1 | IS3 family transposase | - |
| NLY75_RS01185 (NLY75_01185) | - | 208090..208410 (-) | 321 | WP_023369020.1 | transposase | - |
| NLY75_RS01190 (NLY75_01190) | lepB | 208639..209268 (-) | 630 | WP_011921809.1 | signal peptidase I | - |
| NLY75_RS01195 (NLY75_01195) | rnhC | 209278..210168 (-) | 891 | WP_012774927.1 | ribonuclease HIII | - |
| NLY75_RS01200 (NLY75_01200) | - | 210253..211236 (+) | 984 | WP_024384040.1 | Gfo/Idh/MocA family protein | - |
| NLY75_RS01205 (NLY75_01205) | - | 211344..211664 (+) | 321 | WP_023369020.1 | transposase | - |
| NLY75_RS01210 (NLY75_01210) | - | 211688..212548 (+) | 861 | WP_194717471.1 | IS3 family transposase | - |
| NLY75_RS01215 (NLY75_01215) | - | 212899..213981 (+) | 1083 | WP_023369210.1 | LysM domain-containing protein | - |
| NLY75_RS01220 (NLY75_01220) | treC | 214500..216125 (-) | 1626 | WP_023369206.1 | alpha,alpha-phosphotrehalase | - |
| NLY75_RS01225 (NLY75_01225) | treP | 216206..218200 (-) | 1995 | WP_023369204.1 | PTS system trehalose-specific EIIBC component | - |
| NLY75_RS01230 (NLY75_01230) | treR | 218432..219145 (+) | 714 | WP_012774930.1 | trehalose operon repressor | Regulator |
| NLY75_RS01235 (NLY75_01235) | - | 219203..219514 (+) | 312 | WP_002935948.1 | hypothetical protein | - |
| NLY75_RS01240 (NLY75_01240) | - | 219511..220059 (+) | 549 | WP_023369202.1 | CvpA family protein | - |
Sequence
Protein
Download Length: 237 a.a. Molecular weight: 27200.07 Da Isoelectric Point: 6.7422
>NTDB_id=705303 NLY75_RS01230 WP_012774930.1 218432..219145(+) (treR) [Streptococcus suis T15]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL
Nucleotide
Download Length: 714 bp
>NTDB_id=705303 NLY75_RS01230 WP_012774930.1 218432..219145(+) (treR) [Streptococcus suis T15]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| treR | Streptococcus mutans UA159 |
52.137 |
98.734 |
0.515 |