Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NLY76_RS09585 Genome accession   NZ_CP100430
Coordinates   1978513..1979880 (-) Length   455 a.a.
NCBI ID   WP_061366867.1    Uniprot ID   A0AAJ2PEW6
Organism   Streptococcus suis strain LSS42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973513..1984880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS09560 (NLY76_09560) - 1974269..1975549 (-) 1281 WP_044757339.1 MFS transporter -
  NLY76_RS09565 (NLY76_09565) - 1975641..1976300 (-) 660 WP_015647482.1 hypothetical protein -
  NLY76_RS09570 (NLY76_09570) - 1976305..1976751 (-) 447 WP_044770223.1 LytTR family DNA-binding domain-containing protein -
  NLY76_RS09575 (NLY76_09575) - 1976929..1977687 (-) 759 WP_002939965.1 TIGR00266 family protein -
  NLY76_RS09580 (NLY76_09580) - 1977896..1978390 (-) 495 WP_014638738.1 carbonic anhydrase -
  NLY76_RS09585 (NLY76_09585) radA 1978513..1979880 (-) 1368 WP_061366867.1 DNA repair protein RadA Machinery gene
  NLY76_RS09590 (NLY76_09590) - 1979887..1980420 (-) 534 WP_024389493.1 histidine phosphatase family protein -
  NLY76_RS09595 (NLY76_09595) - 1980427..1980870 (-) 444 WP_024395767.1 dUTP diphosphatase -
  NLY76_RS09600 (NLY76_09600) - 1980899..1981423 (-) 525 WP_024395768.1 hypothetical protein -
  NLY76_RS09605 (NLY76_09605) - 1981617..1981976 (-) 360 WP_029175487.1 YbaN family protein -
  NLY76_RS09610 (NLY76_09610) - 1982104..1982706 (+) 603 WP_015647489.1 NADPH-dependent FMN reductase -
  NLY76_RS09615 (NLY76_09615) - 1982721..1983956 (+) 1236 WP_044685380.1 NAD(P)H-dependent oxidoreductase -
  NLY76_RS09620 (NLY76_09620) - 1984037..1984831 (+) 795 WP_024395466.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49885.45 Da        Isoelectric Point: 6.5158

>NTDB_id=705228 NLY76_RS09585 WP_061366867.1 1978513..1979880(-) (radA) [Streptococcus suis strain LSS42]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=705228 NLY76_RS09585 WP_061366867.1 1978513..1979880(-) (radA) [Streptococcus suis strain LSS42]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGTCCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACCAAGACCAATATGGAAGAGTTTAAC
CGTGTCCTTGGTGGCGGCGTGGTGCCGGGCAGCCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTTCAAGTATCTACTCAGCTGTCTACCATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATTAAGCCAGATTTCTTGATTATCGATTCGATCCAGACCATCATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGTACTCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTATATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAATCGTTTTGGCTCTACCAACGAAATCGGTATTTTTGAAAT
GCAGTCACAGGGCTTGGTTGAAGTTCTCAATCCAAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCGGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTATCTCAAGTCAGCAGGTGGAGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTCGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGAGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TTAAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624