Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NLY76_RS08730 Genome accession   NZ_CP100430
Coordinates   1790699..1792489 (-) Length   596 a.a.
NCBI ID   WP_024412044.1    Uniprot ID   A0A0Z8RPX8
Organism   Streptococcus suis strain LSS42     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785699..1797489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS08710 (NLY76_08710) - 1786506..1787408 (-) 903 WP_002942329.1 ABC transporter permease -
  NLY76_RS08715 (NLY76_08715) opp4B 1787422..1788378 (-) 957 WP_044686894.1 oligopeptide ABC transporter permease -
  NLY76_RS08720 (NLY76_08720) - 1788380..1789321 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  NLY76_RS08725 (NLY76_08725) - 1789324..1790322 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  NLY76_RS08730 (NLY76_08730) oppA 1790699..1792489 (-) 1791 WP_024412044.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NLY76_RS08735 (NLY76_08735) pbp3 1792702..1793943 (+) 1242 WP_024389685.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NLY76_RS08740 (NLY76_08740) sufB 1794078..1795493 (-) 1416 WP_015647354.1 Fe-S cluster assembly protein SufB -
  NLY76_RS08745 (NLY76_08745) sufU 1795843..1796283 (-) 441 WP_015647355.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65686.67 Da        Isoelectric Point: 4.5719

>NTDB_id=705224 NLY76_RS08730 WP_024412044.1 1790699..1792489(-) (oppA) [Streptococcus suis strain LSS42]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKKASNLNIVGSLDSAYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=705224 NLY76_RS08730 WP_024412044.1 1790699..1792489(-) (oppA) [Streptococcus suis strain LSS42]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCGGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCGGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGATGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGATTCAACA
TTTGGTGGTATGGTTGACATTTCAATGTTCGGTTACGATGGAGATCGTAAGTTGGACGACTCAGGTCTTGCTAAGGCTGA
ATTTGATGTGAAAGGTAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGCATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGCCCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATTACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGACATGC
CAGTAGATCAGTTGGATTCATATAAAAAAGCATCTAACTTGAATATTGTTGGTTCTTTGGACTCGGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAAGCAGCCGGTAAGAACGTTATGGACGAAAATGCCAAGATGAATGATGTGAAGCT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCCCGTAAACGTACTGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGACCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCTGATGAAAACACTAAGTTATTGGAAGCAATTAGTTCGACAGAATCATTTGACGACAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8RPX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.644

100

0.966