Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NLY76_RS01145 Genome accession   NZ_CP100430
Coordinates   229425..230138 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain LSS42     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 224425..235138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS01135 (NLY76_01135) treC 225491..227116 (-) 1626 WP_044757773.1 alpha,alpha-phosphotrehalase -
  NLY76_RS01140 (NLY76_01140) treP 227197..229191 (-) 1995 WP_044770005.1 PTS system trehalose-specific EIIBC component -
  NLY76_RS01145 (NLY76_01145) treR 229425..230138 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  NLY76_RS01150 (NLY76_01150) - 230196..230507 (+) 312 WP_002935948.1 hypothetical protein -
  NLY76_RS01155 (NLY76_01155) - 230504..231052 (+) 549 WP_044770007.1 CvpA family protein -
  NLY76_RS01160 (NLY76_01160) - 231473..233806 (+) 2334 WP_044770009.1 endonuclease MutS2 -
  NLY76_RS01165 (NLY76_01165) - 233830..234530 (+) 701 Protein_195 GNAT family N-acetyltransferase -
  NLY76_RS01170 (NLY76_01170) trxA 234741..235055 (+) 315 WP_044686992.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=705197 NLY76_RS01145 WP_012774930.1 229425..230138(+) (treR) [Streptococcus suis strain LSS42]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=705197 NLY76_RS01145 WP_012774930.1 229425..230138(+) (treR) [Streptococcus suis strain LSS42]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTGCC
GACAGAACAACAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGTTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATATAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515