Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PF449_RS08700 Genome accession   NZ_CP115623
Coordinates   1814033..1814668 (+) Length   211 a.a.
NCBI ID   WP_281716562.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00340     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809033..1819668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF449_RS08675 (PF449_08675) - 1809873..1810886 (+) 1014 WP_001096106.1 phosphotransferase -
  PF449_RS08680 (PF449_08680) murU 1810886..1811575 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  PF449_RS08685 (PF449_08685) rsmG 1811663..1812295 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  PF449_RS08690 (PF449_08690) - 1812317..1813099 (+) 783 WP_000057212.1 ParA family protein -
  PF449_RS08695 (PF449_08695) - 1813096..1813983 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  PF449_RS08700 (PF449_08700) exbB 1814033..1814668 (+) 636 WP_281716562.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PF449_RS08705 (PF449_08705) - 1814684..1815112 (+) 429 WP_000669685.1 biopolymer transporter ExbD -
  PF449_RS08710 (PF449_08710) msbA 1815109..1816836 (+) 1728 WP_031960445.1 lipid A export permease/ATP-binding protein MsbA -
  PF449_RS08715 (PF449_08715) lpxK 1816839..1817849 (+) 1011 WP_031960446.1 tetraacyldisaccharide 4'-kinase -
  PF449_RS08720 (PF449_08720) kdsB 1817859..1818620 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PF449_RS08725 (PF449_08725) - 1818632..1819612 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23232.12 Da        Isoelectric Point: 6.4861

>NTDB_id=705157 PF449_RS08700 WP_281716562.1 1814033..1814668(+) (exbB) [Acinetobacter baumannii strain 2022CK-00340]
MWELVKAGGWLMLPLFLCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=705157 PF449_RS08700 WP_281716562.1 1814033..1814668(+) (exbB) [Acinetobacter baumannii strain 2022CK-00340]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTATTTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389