Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   L4174_RS01825 Genome accession   NZ_CP100425
Coordinates   400807..402297 (-) Length   496 a.a.
NCBI ID   WP_248143884.1    Uniprot ID   -
Organism   Photobacterium sp. CCB-ST2H9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395807..407297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS01795 (L4174_001795) pmbA 395824..397167 (+) 1344 WP_248144202.1 metalloprotease PmbA -
  L4174_RS01800 (L4174_001800) mgtE 397246..398604 (-) 1359 WP_248143880.1 magnesium transporter -
  L4174_RS01805 (L4174_001805) - 398871..399146 (-) 276 WP_248143881.1 HPr family phosphocarrier protein -
  L4174_RS01810 (L4174_001810) rapZ 399149..400012 (-) 864 WP_248143882.1 RNase adapter RapZ -
  L4174_RS01815 (L4174_001815) ptsN 400034..400486 (-) 453 WP_248143883.1 PTS IIA-like nitrogen regulatory protein PtsN -
  L4174_RS01820 (L4174_001820) hpf 400488..400775 (-) 288 WP_036749710.1 ribosome hibernation promoting factor -
  L4174_RS01825 (L4174_001825) rpoN/rpoN1 400807..402297 (-) 1491 WP_248143884.1 RNA polymerase factor sigma-54 Machinery gene
  L4174_RS01830 (L4174_001830) lptB 402376..403101 (-) 726 WP_036749704.1 LPS export ABC transporter ATP-binding protein -
  L4174_RS01835 (L4174_001835) lptA 403115..403615 (-) 501 WP_248143885.1 lipopolysaccharide transport periplasmic protein LptA -
  L4174_RS01840 (L4174_001840) lptC 403596..404159 (-) 564 WP_248143886.1 LPS export ABC transporter periplasmic protein LptC -
  L4174_RS01845 (L4174_001845) kdsC 404156..404704 (-) 549 WP_371929367.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  L4174_RS01850 (L4174_001850) - 404716..405687 (-) 972 WP_248143888.1 KpsF/GutQ family sugar-phosphate isomerase -
  L4174_RS01855 (L4174_001855) - 405702..406688 (-) 987 WP_248143889.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55883.76 Da        Isoelectric Point: 4.3540

>NTDB_id=705107 L4174_RS01825 WP_248143884.1 400807..402297(-) (rpoN/rpoN1) [Photobacterium sp. CCB-ST2H9]
MKTSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDANPLLELDESHDNDTTSSDNDEIRAESANGKDDSVEQY
DEISSDSFDTSEVIEQREMPSDLPVDTTWDDVYSAGTGSTGIAPDDDMPVYQGETTETLQDYLMWQLELTPFSDTDRAIA
FAIIDAIDDKGYLTCSCEDILESMGDENVELDEVEAVLKRVQQFDPLGVASRSLQECLLLQLATYPEDTPWLNEAKTILT
QHLDLLANRDYRQLMRDTKLKEDELKNVMSLIHSLDPRPGNRVVASETEYVVPDVSVFKDKGKWVVTINPDSVPRLRVNE
QYAALSKHTRNSADSQFIRSHLQDAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDIALAVDMHESTI
SRVTTQKYMHTPRGIFELKFFFSSHVSTDNGGECSSTAIRALVKKLVAAENQAKPLSDSKIATLLADQGIMVARRTIAKY
RESLGIPPSSQRKRLL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=705107 L4174_RS01825 WP_248143884.1 400807..402297(-) (rpoN/rpoN1) [Photobacterium sp. CCB-ST2H9]
ATGAAAACTTCGCTCCAGCTTAAGCTAGGTCAACAATTGGCAATGACGCCGCAACTGCAACAAGCCATTCGCTTGTTGCA
ACTGTCGACACTGGACCTGCAACAGGAAATCCAGGAAGCCTTAGATGCCAACCCTTTGCTGGAGCTCGACGAGAGTCATG
ACAACGACACCACATCCTCAGATAATGATGAAATCCGTGCGGAAAGCGCAAACGGCAAGGATGATTCAGTCGAACAATAC
GACGAGATCAGTAGTGACAGCTTTGACACCTCTGAAGTCATTGAACAGCGGGAAATGCCTTCCGATTTACCCGTTGATAC
CACCTGGGACGACGTCTACAGCGCGGGCACCGGCAGCACCGGAATTGCCCCCGATGATGATATGCCGGTCTATCAGGGGG
AAACCACGGAAACCCTGCAAGATTACCTGATGTGGCAGCTGGAGCTGACCCCGTTCAGCGATACCGACCGTGCCATCGCC
TTCGCCATCATTGATGCCATTGATGACAAGGGCTATCTCACCTGCAGTTGTGAAGACATTCTTGAGAGTATGGGCGATGA
AAACGTCGAGCTTGATGAAGTCGAAGCCGTGCTGAAACGGGTTCAGCAGTTTGACCCGCTCGGTGTTGCCTCGCGCAGCC
TTCAAGAATGCCTGTTACTTCAGCTGGCAACCTATCCGGAAGACACTCCGTGGCTGAATGAAGCCAAAACGATTCTGACT
CAACACCTCGACTTGCTGGCAAACCGTGATTACCGCCAGCTGATGCGCGATACCAAGCTCAAGGAAGACGAGCTGAAAAA
CGTGATGTCCCTGATCCACTCGCTGGATCCGCGTCCCGGAAACCGGGTCGTCGCCTCTGAGACCGAATATGTTGTTCCGG
ACGTGTCCGTCTTCAAGGACAAAGGCAAGTGGGTGGTCACCATCAACCCCGACAGCGTGCCTCGCCTGCGGGTGAATGAG
CAATATGCAGCGCTGAGTAAACACACGCGAAACAGCGCAGACAGCCAGTTTATTCGCAGTCACCTGCAGGATGCCAAGTG
GCTGATCAAAAGTCTGGAAAGCCGGAATGAAACCCTGCTCAAAGTTGCCCGCTGCATCGTGGAGCACCAGCAGGACTTTT
TCGAATACGGCGAAGAAGCCATGAAGCCGATGGTTCTGAACGACATCGCACTGGCCGTCGATATGCACGAATCCACCATT
TCCCGGGTCACAACGCAGAAATATATGCATACTCCCCGGGGTATCTTTGAGTTGAAATTCTTCTTTTCCAGCCATGTCAG
TACGGATAACGGGGGCGAATGTTCTTCCACCGCGATCCGAGCACTGGTGAAGAAATTGGTTGCGGCTGAGAATCAGGCCA
AACCTTTGAGTGATAGCAAAATAGCGACATTACTGGCGGATCAAGGCATCATGGTGGCCCGACGTACTATTGCCAAATAC
CGTGAATCGCTTGGTATCCCGCCTTCAAGCCAAAGAAAGCGCCTGCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-494)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.693

100

0.484