Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   NIN90_RS21445 Genome accession   NZ_CP100423
Coordinates   1307308..1308405 (+) Length   365 a.a.
NCBI ID   WP_004726763.1    Uniprot ID   A0A0Q2SGB9
Organism   Vibrio furnissii strain 104486766     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1267944..1306888 1307308..1308405 flank 420


Gene organization within MGE regions


Location: 1267944..1308405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS21195 - 1267944..1269830 (-) 1887 WP_014257451.1 hypothetical protein -
  NIN90_RS24840 - 1269860..1269967 (-) 108 WP_014257450.1 GpE family phage tail protein -
  NIN90_RS21200 - 1270003..1270290 (-) 288 WP_014257449.1 phage tail assembly protein -
  NIN90_RS21205 gpM 1270274..1270981 (-) 708 WP_014257448.1 phage terminase small subunit -
  NIN90_RS21210 - 1270992..1271357 (-) 366 WP_004726844.1 phage tail tube protein -
  NIN90_RS21215 - 1271361..1272494 (-) 1134 WP_014257447.1 phage tail sheath subtilisin-like domain-containing protein -
  NIN90_RS21220 - 1272491..1272673 (-) 183 WP_014257446.1 DUF2635 domain-containing protein -
  NIN90_RS21225 - 1272674..1273213 (-) 540 WP_014257445.1 phage virion morphogenesis protein -
  NIN90_RS21230 - 1273210..1273674 (-) 465 WP_014257444.1 phage tail protein -
  NIN90_RS21235 - 1273674..1274123 (-) 450 WP_014257443.1 head completion/stabilization protein -
  NIN90_RS21240 - 1274232..1275269 (-) 1038 WP_014257442.1 phage major capsid protein, P2 family -
  NIN90_RS21245 - 1275312..1276139 (-) 828 WP_014257441.1 GPO family capsid scaffolding protein -
  NIN90_RS21250 - 1276274..1278034 (+) 1761 WP_232658991.1 terminase family protein -
  NIN90_RS21255 - 1278045..1279001 (+) 957 WP_014257439.1 phage portal protein -
  NIN90_RS21260 - 1279023..1279616 (-) 594 WP_041943177.1 Fic family protein -
  NIN90_RS21265 - 1279606..1279764 (-) 159 WP_193386120.1 hypothetical protein -
  NIN90_RS21270 - 1279915..1280532 (-) 618 WP_014257437.1 KilA-N domain-containing protein -
  NIN90_RS21275 - 1280955..1281866 (+) 912 WP_014257436.1 DUF6602 domain-containing protein -
  NIN90_RS21280 - 1282576..1282827 (-) 252 WP_004726819.1 hypothetical protein -
  NIN90_RS21285 - 1282818..1283048 (-) 231 WP_004726817.1 hypothetical protein -
  NIN90_RS21290 - 1283059..1283475 (-) 417 WP_014257434.1 glycoside hydrolase family protein -
  NIN90_RS21295 - 1283592..1284518 (-) 927 WP_041943175.1 hypothetical protein -
  NIN90_RS21300 - 1284518..1285600 (-) 1083 WP_014257432.1 phage tail protein -
  NIN90_RS21305 - 1285597..1286076 (-) 480 WP_014257431.1 hypothetical protein -
  NIN90_RS21310 - 1286058..1287104 (-) 1047 WP_014257430.1 baseplate J/gp47 family protein -
  NIN90_RS21315 - 1287101..1287487 (-) 387 WP_014257429.1 phage GP46 family protein -
  NIN90_RS21320 - 1287484..1288059 (-) 576 WP_004726805.1 phage baseplate assembly protein V -
  NIN90_RS21325 - 1288052..1288990 (-) 939 WP_004726803.1 hypothetical protein -
  NIN90_RS21330 - 1288987..1290177 (-) 1191 WP_014257428.1 DNA circularization N-terminal domain-containing protein -
  NIN90_RS21335 - 1290499..1291122 (-) 624 WP_014257427.1 hypothetical protein -
  NIN90_RS21340 - 1291280..1291516 (-) 237 WP_014257426.1 ogr/Delta-like zinc finger family protein -
  NIN90_RS21345 - 1291526..1294156 (-) 2631 WP_232658989.1 replication endonuclease -
  NIN90_RS21350 - 1294199..1294579 (+) 381 WP_041943172.1 hypothetical protein -
  NIN90_RS21355 - 1294715..1294942 (-) 228 WP_075990099.1 hypothetical protein -
  NIN90_RS21360 - 1294924..1295235 (-) 312 WP_020433788.1 hypothetical protein -
  NIN90_RS21365 - 1295308..1295640 (-) 333 WP_232658987.1 hypothetical protein -
  NIN90_RS21370 - 1295650..1296189 (-) 540 WP_014257423.1 phage regulatory CII family protein -
  NIN90_RS21375 - 1296247..1296705 (-) 459 WP_004726785.1 hypothetical protein -
  NIN90_RS21380 - 1296836..1297561 (+) 726 WP_154179820.1 S24 family peptidase -
  NIN90_RS21385 - 1297606..1297839 (-) 234 WP_232658986.1 hypothetical protein -
  NIN90_RS21390 - 1297838..1298191 (+) 354 WP_232658985.1 hypothetical protein -
  NIN90_RS21395 - 1298559..1299965 (+) 1407 WP_254413536.1 IS66 family transposase -
  NIN90_RS21400 - 1299957..1300202 (-) 246 WP_254413679.1 hypothetical protein -
  NIN90_RS21405 - 1300334..1301299 (-) 966 WP_232658983.1 hypothetical protein -
  NIN90_RS21410 - 1301442..1302878 (-) 1437 WP_254413680.1 hypothetical protein -
  NIN90_RS21415 - 1303014..1303772 (-) 759 WP_232658981.1 SEC-C metal-binding domain-containing protein -
  NIN90_RS21420 - 1304074..1305042 (+) 969 WP_232658980.1 tyrosine-type recombinase/integrase -
  NIN90_RS21425 - 1305204..1305521 (-) 318 WP_004726770.1 DUF496 family protein -
  NIN90_RS21430 - 1305711..1305908 (+) 198 WP_014257418.1 hypothetical protein -
  NIN90_RS21435 - 1305952..1306587 (+) 636 WP_004726766.1 YceH family protein -
  NIN90_RS21440 - 1306598..1306888 (+) 291 WP_232658979.1 GIY-YIG nuclease family protein -
  NIN90_RS21445 luxP 1307308..1308405 (+) 1098 WP_004726763.1 autoinducer 2-binding periplasmic protein LuxP Regulator

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41539.74 Da        Isoelectric Point: 5.2793

>NTDB_id=705096 NIN90_RS21445 WP_004726763.1 1307308..1308405(+) (luxP) [Vibrio furnissii strain 104486766]
MKKTLFLSLLLGFTPFASSYSSQVLNGYWHYQEFLNANPQQKALTESLSDAVRQSSQRLTVKQQTPVTISVVYPGQQISD
YWVRNIKAFEMRLEELGIEYQINQVFTRPNQDTRQQSLSLMEAVKNNTDYLIFTLDTTRHRKFIEHVLNSSPTKLILQNI
TTPVRDWDERQPMMYVGFDHELGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMESTGDYQLASSYYTKAT
QESGYEATVNIVKNDPDIKFIYACSTDVALGAAKALQALKREDIQVNGWGGGSAELEALDEGHLDVTVMRINDDTGIAMA
EAIKRDLEGLAVPVVYSGDFEIVTKDDQPKKIGLFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=705096 NIN90_RS21445 WP_004726763.1 1307308..1308405(+) (luxP) [Vibrio furnissii strain 104486766]
ATGAAGAAAACGCTTTTTCTTTCTCTTTTACTTGGTTTCACTCCTTTTGCCTCTTCGTATTCATCACAAGTGCTGAATGG
TTACTGGCATTATCAGGAATTTCTGAATGCCAATCCGCAACAAAAGGCACTGACTGAGTCGTTGTCTGATGCGGTGCGTC
AATCGTCTCAGCGGCTGACGGTCAAACAACAAACGCCGGTGACCATTTCGGTGGTTTATCCGGGGCAGCAGATCTCCGAT
TACTGGGTGCGCAACATCAAAGCGTTTGAAATGCGATTGGAAGAGTTAGGCATTGAATACCAGATTAATCAGGTGTTTAC
GCGCCCGAACCAAGACACCCGCCAACAAAGCTTGTCGTTGATGGAAGCGGTGAAGAACAATACGGATTATTTGATTTTCA
CGCTGGATACAACGCGCCACCGCAAGTTTATTGAACACGTTCTGAACTCGTCACCAACCAAATTGATTTTGCAGAATATC
ACCACGCCGGTTCGAGACTGGGATGAACGCCAGCCTATGATGTACGTTGGGTTTGACCATGAACTCGGTGCGCAGCAACT
TGCGCAGTATTATCGCGAGCATGTTCCCAAAGGCAGCAAGTATTCGGTGCTGTATTTCTCTGAAGGGTACGTCAGCGATG
CGCGTGGCGACACTTTCATTCAGCAGATGGAAAGCACGGGCGATTACCAGCTGGCCTCGTCGTATTACACCAAAGCGACA
CAAGAAAGTGGCTATGAAGCCACCGTTAACATTGTCAAAAATGACCCAGATATTAAATTTATTTACGCCTGTTCCACTGA
TGTGGCACTGGGCGCAGCCAAGGCGCTACAAGCGTTAAAACGTGAAGATATTCAGGTGAATGGCTGGGGTGGTGGCTCGG
CAGAGCTAGAAGCCTTGGATGAAGGTCATCTTGATGTTACTGTCATGAGAATCAATGATGATACCGGCATTGCGATGGCG
GAAGCGATCAAACGTGATTTGGAAGGTTTGGCCGTGCCCGTAGTGTATTCCGGTGACTTTGAGATCGTGACCAAAGACGA
TCAGCCGAAAAAAATTGGTTTGTTTAAGCAACGCGCCTTTCGTTATTCCGACCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2SGB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704