Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NIN90_RS14115 Genome accession   NZ_CP100422
Coordinates   3034762..3035769 (-) Length   335 a.a.
NCBI ID   WP_004728525.1    Uniprot ID   -
Organism   Vibrio furnissii strain 104486766     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029762..3040769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS14090 rraA 3030394..3030930 (-) 537 WP_004728530.1 ribonuclease E activity regulator RraA -
  NIN90_RS14095 - 3031006..3031923 (-) 918 WP_014204315.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NIN90_RS14100 hslU 3032017..3033348 (-) 1332 WP_004728528.1 HslU--HslV peptidase ATPase subunit -
  NIN90_RS14105 hslV 3033385..3033942 (-) 558 WP_014204312.1 ATP-dependent protease subunit HslV -
  NIN90_RS14110 - 3034081..3034632 (-) 552 WP_038152602.1 SPOR domain-containing protein -
  NIN90_RS14115 cytR 3034762..3035769 (-) 1008 WP_004728525.1 DNA-binding transcriptional regulator CytR Regulator
  NIN90_RS14120 priA 3036077..3038278 (-) 2202 WP_232658232.1 primosomal protein N' -
  NIN90_RS14125 rpmE 3038525..3038743 (+) 219 WP_004728523.1 50S ribosomal protein L31 -
  NIN90_RS14130 - 3038954..3040228 (+) 1275 WP_014204309.1 malic enzyme-like NAD(P)-binding protein -
  NIN90_RS14135 metJ 3040305..3040622 (-) 318 WP_004728521.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36886.40 Da        Isoelectric Point: 6.3510

>NTDB_id=705088 NIN90_RS14115 WP_004728525.1 3034762..3035769(-) (cytR) [Vibrio furnissii strain 104486766]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQIAGPEAAVLCQFRQQGYQQALRRAGISRNPTYSTIGDFTFESGAKAVRQLMALPEPPTA
IFCHNDTMAIGAIQEAKRLGMRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLD
TQLVIRESAAPPRSA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=705088 NIN90_RS14115 WP_004728525.1 3034762..3035769(-) (cytR) [Vibrio furnissii strain 104486766]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCGACGGCGACAGTCTCGCGCGCTCTGATGAATCCCGAGAA
AGTTTCAGCCTCAACCCGTAAACGGGTTGAAGAGGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCCCGAAATC
TGCGTCGCAATGAATCGAAAACCATTGTCGCGATCGTGCCGGACATCTGTGATCCTTATTACACCGAAATTATTCGTGGT
ATCGAAGACGCCGCGATGGAACACGGTTATCTGGTACTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACTTGGTATTTACCAAACAGGCGGACGGTATGCTATTGCTGGGGACCGATTTGCCGTTTGACGTGAGCAAACCTG
AGCAGAAAAACCTACCACCGATGGTGATGGCGTGTGAGTTTGCGCCAGAACTTGAATTACCGACGGTGCATATCGATAAC
CTGACATCTGCCTTTGAAGCGGTGAACTATCTGACGCAGATGGGGCACAAACGCATCGCGCAGATTGCCGGCCCTGAAGC
GGCGGTGTTGTGTCAGTTCCGTCAGCAAGGGTATCAACAAGCCCTGCGCCGCGCGGGGATTTCACGCAATCCAACCTACA
GTACCATCGGTGACTTTACGTTTGAGTCGGGTGCCAAAGCGGTGCGCCAATTGATGGCCCTGCCGGAGCCGCCGACAGCC
ATTTTCTGTCACAACGATACCATGGCGATTGGTGCCATTCAGGAAGCCAAGCGTTTGGGCATGCGTGTGCCGCAAGACCT
GTCTGTGGTCGGCTTTGATGACATTCAGTTTGCGCAGTACTGCGATCCACCGCTAACCACCATTTCTCAGCCGCGTTACG
AGATCGGCCGTCAGGCGATGTTGATGATGCTTGAGTTACTGCGGGGTCATGATGTGCGTGCGGGCTCGCGTCTGCTCGAC
ACCCAATTGGTCATTCGCGAGAGTGCAGCGCCGCCCCGCTCGGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.373

99.104

0.925
  cytR Vibrio parahaemolyticus RIMD 2210633

90.149

100

0.901