Detailed information NTG0705075

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: NIN90_RS06240
• Genome accession: NZ_CP100422
• Coordinates: 1350841..1352262 (-)
• Length: 473 a.a.
• NCBI ID: WP_232658670.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain 104486766
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1345841..1357262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NIN90_RS06225	cdd	1348659..1349546 (-)	888	WP_004726199.1	cytidine deaminase	-
NIN90_RS06230	-	1349755..1350435 (-)	681	WP_014205225.1	LrgB family protein	-
NIN90_RS06235	-	1350426..1350800 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
NIN90_RS06240	sbcB	1350841..1352262 (-)	1422	WP_232658670.1	exodeoxyribonuclease I	Machinery gene
NIN90_RS06245	-	1352426..1352596 (-)	171	Protein_1182	cation:dicarboxylase symporter family transporter	-
NIN90_RS06250	-	1352707..1354020 (-)	1314	WP_232658671.1	alpha/beta hydrolase	-
NIN90_RS06255	-	1354316..1355245 (+)	930	WP_232658672.1	hypothetical protein	-
NIN90_RS06260	-	1355566..1355778 (+)	213	WP_232658673.1	hypothetical protein	-
NIN90_RS06265	-	1355857..1357242 (-)	1386	WP_004726194.1	L-cystine transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54358.74 Da
• Isoelectric Point: 4.8928

>NTDB_id=705075 NIN90_RS06240 WP_232658670.1 1350841..1352262(-) (sbcB) [Vibrio furnissii strain 104486766]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=705075 NIN90_RS06240 WP_232658670.1 1350841..1352262(-) (sbcB) [Vibrio furnissii strain 104486766]
ATGCAGCAACAGCAGCCCACTTATTTCTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAGCCCGAA
TTCATCGCCAAGATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGCTTTGACGATGA
AGTCACCCGCTATACCTGTTATCGCAACTTCCTTGATCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGTGCATGTCACGCGTTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTCAAACTGGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCACACGATGCGATGGCCGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCAGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTACCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCTCCAGCAAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCTGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCTCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCTGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.439	99.577	0.831