Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   NIN90_RS05375 Genome accession   NZ_CP100422
Coordinates   1164432..1165025 (+) Length   197 a.a.
NCBI ID   WP_038151289.1    Uniprot ID   A0A0Q2XYP7
Organism   Vibrio furnissii strain 104486766     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159432..1170025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS05355 panP 1159776..1161419 (-) 1644 WP_206981462.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  NIN90_RS05360 - 1161558..1162070 (-) 513 WP_055466373.1 hypothetical protein -
  NIN90_RS05365 - 1162214..1163119 (-) 906 WP_143679187.1 lysine exporter LysO family protein -
  NIN90_RS05370 - 1163139..1164059 (-) 921 WP_004726364.1 HDOD domain-containing protein -
  NIN90_RS05375 tfoX 1164432..1165025 (+) 594 WP_038151289.1 TfoX/Sxy family DNA transformation protein Regulator
  NIN90_RS05380 - 1165157..1165705 (-) 549 WP_004726362.1 hypothetical protein -
  NIN90_RS05385 - 1165930..1166427 (-) 498 WP_004726361.1 response regulator -
  NIN90_RS05390 - 1166437..1168380 (-) 1944 WP_232658610.1 ATP-binding protein -
  NIN90_RS05395 - 1168613..1169884 (+) 1272 WP_004726359.1 DUF945 family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23223.76 Da        Isoelectric Point: 8.1208

>NTDB_id=705073 NIN90_RS05375 WP_038151289.1 1164432..1165025(+) (tfoX) [Vibrio furnissii strain 104486766]
MDMCEHRFFDYAIKFGAYQKRSMFGGIGLFQQEAMYALLTDDCIFIRGGEDLDKILTDLGCEKYRHVKKQTTATVNYYDI
TQLFEQNYSDLDSIIERAILYSIEQRYFQKSHANRRLRDLPNMQLTLERMVKKAGVEDVDTFMRLGAPEVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCHAR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=705073 NIN90_RS05375 WP_038151289.1 1164432..1165025(+) (tfoX) [Vibrio furnissii strain 104486766]
ATGGATATGTGTGAGCATAGATTTTTCGATTATGCAATTAAGTTTGGTGCCTACCAAAAACGCTCTATGTTTGGTGGTAT
TGGTTTGTTTCAACAAGAGGCGATGTATGCCTTGCTAACCGATGACTGCATCTTTATTCGGGGTGGTGAAGACCTCGATA
AAATTTTGACGGATCTGGGGTGTGAGAAATATCGCCATGTGAAGAAGCAAACAACCGCAACGGTTAACTATTACGATATT
ACACAGCTATTTGAACAAAATTATTCGGATTTAGATTCAATTATCGAACGCGCTATCTTGTATTCGATTGAACAACGGTA
CTTTCAGAAATCGCATGCGAATCGCCGGCTGAGGGATTTGCCTAATATGCAGTTAACGCTGGAACGTATGGTGAAGAAGG
CGGGCGTTGAAGACGTGGACACTTTCATGCGTTTAGGTGCGCCGGAAGTGTTCAATAAAGTTCGTCGTATTTACGGTAGT
GATTTGGATGTGAAATTGCTGTGGAAATTCGCGGGTGCGATTGAAGGAATCCATTGGAAACTGCTGCAAGAGCCGCGCAA
GCGTCAATTGTTAGAAAGCTGTCACGCGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(14-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XYP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

78.462

98.985

0.777
  tfoX Vibrio cholerae strain A1552

78.462

98.985

0.777
  tfoX Vibrio campbellii strain DS40M4

66.667

98.985

0.66
  tfoX Vibrio parahaemolyticus RIMD 2210633

65.128

98.985

0.645
  tfoX Aliivibrio fischeri ES114

57.732

98.477

0.569