Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NIN90_RS02430 Genome accession   NZ_CP100422
Coordinates   500775..501293 (+) Length   172 a.a.
NCBI ID   WP_014205765.1    Uniprot ID   A0A0Q2V091
Organism   Vibrio furnissii strain 104486766     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 495775..506293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS02420 gshA 498577..500142 (+) 1566 WP_254413592.1 glutamate--cysteine ligase -
  NIN90_RS02425 - 500144..500749 (+) 606 WP_044367718.1 hypothetical protein -
  NIN90_RS02430 luxS 500775..501293 (+) 519 WP_014205765.1 S-ribosylhomocysteine lyase Regulator
  NIN90_RS02435 - 501400..502674 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  NIN90_RS02440 - 502765..503559 (-) 795 WP_004723874.1 inner membrane protein YpjD -
  NIN90_RS02445 ffh 503772..505151 (+) 1380 WP_004723876.1 signal recognition particle protein -
  NIN90_RS02450 rpsP 505377..505625 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  NIN90_RS02455 rimM 505653..506207 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18856.59 Da        Isoelectric Point: 4.6766

>NTDB_id=705064 NIN90_RS02430 WP_014205765.1 500775..501293(+) (luxS) [Vibrio furnissii strain 104486766]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=705064 NIN90_RS02430 WP_014205765.1 500775..501293(+) (luxS) [Vibrio furnissii strain 104486766]
ATGCCATTATTAGACAGTTTTACCGTCGACCATACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCCGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCCGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGTCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCAGGCATTCAGGTCAACAAGAACGATGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2V091

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913