Detailed information NTG0705043

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: NKG37_RS23245
• Genome accession: NZ_CP100420
• Coordinates: 4809232..4810299 (-)
• Length: 355 a.a.
• NCBI ID: WP_254415398.1
• Uniprot ID: -
• Organism: Niallia sp. RD1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4804232..4815299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NKG37_RS23205 (NKG37_23205)	-	4805123..4805929 (+)	807	WP_169188825.1	YqhG family protein	-
NKG37_RS23210 (NKG37_23210)	-	4805995..4806183 (-)	189	WP_016204891.1	YqzE family protein	-
NKG37_RS23215 (NKG37_23215)	comGG	4806238..4806618 (-)	381	WP_101730836.1	competence type IV pilus minor pilin ComGG	-
NKG37_RS23220 (NKG37_23220)	comGF	4806625..4807068 (-)	444	WP_016204889.1	competence type IV pilus minor pilin ComGF	-
NKG37_RS23225 (NKG37_23225)	-	4807065..4807364 (-)	300	WP_156827878.1	hypothetical protein	-
NKG37_RS23230 (NKG37_23230)	comGD	4807372..4807773 (-)	402	WP_254415397.1	competence type IV pilus minor pilin ComGD	-
NKG37_RS23235 (NKG37_23235)	comGC	4807806..4808159 (-)	354	WP_051994029.1	competence type IV pilus major pilin ComGC	-
NKG37_RS23240 (NKG37_23240)	comGB	4808211..4809245 (-)	1035	WP_040344239.1	competence type IV pilus assembly protein ComGB	-
NKG37_RS23245 (NKG37_23245)	comGA	4809232..4810299 (-)	1068	WP_254415398.1	competence type IV pilus ATPase ComGA	Machinery gene
NKG37_RS23255 (NKG37_23255)	-	4811013..4811945 (-)	933	WP_212117091.1	cation diffusion facilitator family transporter	-
NKG37_RS23260 (NKG37_23260)	-	4812525..4813223 (+)	699	WP_224427734.1	metalloregulator ArsR/SmtB family transcription factor	-
NKG37_RS23265 (NKG37_23265)	-	4813284..4813919 (-)	636	WP_254415399.1	MBL fold metallo-hydrolase	-
NKG37_RS23270 (NKG37_23270)	-	4813932..4814249 (-)	318	WP_224427735.1	MTH1187 family thiamine-binding protein	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 39989.30 Da
• Isoelectric Point: 8.8760

>NTDB_id=705043 NKG37_RS23245 WP_254415398.1 4809232..4810299(-) (comGA) [Niallia sp. RD1]
MLSIEALANRIIRDAVEQNATDIHITPRQKESILQLRIANRLLTRLVISSVECDKLISHFKFTASMDIGERRKPQNGSIS
TTVNGQYIGLRLSTLPSHPHESLVIRVLTDQNMLPIYHISLFPNISRKLISLLKHAHGLIILTGPTGSGKTTTLYSLLNE
NAHLYQRNVISLEDPIEKTQENVLQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAHIAIRASLTGHLVLTTMH
TRDAKGAIHRLLEFGIKETEIEQTLIAVTAQRLVEIVCPFCDDGCSPSCYRLNDRLKRSTVFEMITGRKISAILYNQTDS
LTNNYKSLGEIICKGIALGYIKKGEYERWIYDEKK

Nucleotide

• Length: 1068 bp

>NTDB_id=705043 NKG37_RS23245 WP_254415398.1 4809232..4810299(-) (comGA) [Niallia sp. RD1]
GTGTTATCTATTGAAGCACTAGCAAATCGGATTATACGTGATGCAGTAGAGCAGAACGCTACTGATATTCACATAACCCC
AAGGCAAAAGGAATCCATCCTTCAATTACGGATTGCTAATCGTTTGCTTACTAGATTAGTAATATCATCTGTGGAATGTG
ACAAATTAATTTCCCACTTCAAATTTACGGCCTCAATGGATATTGGCGAAAGAAGAAAACCGCAAAATGGTTCTATTTCC
ACAACAGTCAATGGTCAGTATATTGGTTTACGTTTATCGACCTTACCATCCCATCCCCATGAAAGCTTAGTAATTCGTGT
ACTTACCGATCAAAATATGCTCCCAATCTATCACATCTCCTTATTTCCGAATATTTCGCGTAAATTAATTTCCTTGTTAA
AGCACGCTCATGGATTAATAATTCTCACCGGTCCGACTGGATCAGGGAAAACGACAACACTCTATTCCCTCTTAAATGAA
AATGCACATCTTTATCAACGAAATGTTATTAGTTTAGAAGATCCAATTGAAAAAACACAGGAAAATGTTCTGCAAATCCA
AGTTAATGAGAAAGCAGGAATTACGTATTCTACTGGCTTAAAAGCAATCCTACGTCATGATCCTGATATTATTATGGTTG
GAGAAATCCGTGATAAAGAAACAGCACATATTGCAATAAGAGCGAGTTTAACAGGACATTTGGTGTTGACTACCATGCAT
ACAAGGGATGCGAAAGGGGCGATTCATCGCTTATTGGAGTTTGGTATTAAGGAGACAGAAATTGAACAAACCTTAATTGC
TGTTACTGCCCAAAGATTGGTCGAGATAGTATGTCCATTTTGTGATGATGGATGTTCGCCTAGCTGTTACCGTTTAAATG
ATCGTTTAAAGCGGTCAACCGTGTTTGAAATGATAACAGGACGTAAGATTTCTGCAATTCTTTATAATCAAACCGATAGT
TTGACAAATAACTATAAATCATTAGGCGAGATTATTTGTAAAGGTATAGCATTAGGTTATATAAAGAAAGGGGAATATGA
ACGGTGGATTTATGATGAAAAAAAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (10-275)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Bacillus subtilis subsp. subtilis str. 168	53.803	100	0.538