Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NKG37_RS22965 Genome accession   NZ_CP100420
Coordinates   4751892..4753580 (-) Length   562 a.a.
NCBI ID   WP_224427518.1    Uniprot ID   -
Organism   Niallia sp. RD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4746892..4758580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKG37_RS22940 (NKG37_22940) tnpA 4746935..4747402 (-) 468 WP_100525941.1 IS200/IS605 family transposase -
  NKG37_RS22945 (NKG37_22945) - 4747589..4747789 (-) 201 WP_016203255.1 cold-shock protein -
  NKG37_RS22950 (NKG37_22950) spo0A 4748116..4748901 (-) 786 WP_016203256.1 sporulation transcription factor Spo0A -
  NKG37_RS22955 (NKG37_22955) - 4749397..4750314 (+) 918 WP_016203257.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NKG37_RS22960 (NKG37_22960) spoIVB 4750386..4751678 (-) 1293 WP_016203258.1 SpoIVB peptidase -
  NKG37_RS22965 (NKG37_22965) recN 4751892..4753580 (-) 1689 WP_224427518.1 DNA repair protein RecN Machinery gene
  NKG37_RS22970 (NKG37_22970) argR 4753597..4754046 (-) 450 WP_016203262.1 transcriptional regulator ArgR -
  NKG37_RS22975 (NKG37_22975) - 4754328..4755644 (-) 1317 WP_254415388.1 ISLre2 family transposase -
  NKG37_RS22980 (NKG37_22980) - 4755982..4756812 (-) 831 WP_040343429.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63550.66 Da        Isoelectric Point: 5.1036

>NTDB_id=705042 NKG37_RS22965 WP_224427518.1 4751892..4753580(-) (recN) [Niallia sp. RD1]
MLSELSIKNFAIIDSLSISFKKGLSVLTGETGAGKSIIIDAINLLVGGRGSAEFVRHGEEKAEIEGLFYIEDGHPCFRKM
DEFGIDIDEGTIVLRRDIALSGKSVCRINGKLITIAVLREIGSTLIDIHGQHEHQELMDETKHLHLLDTFAMGELAPVLE
EYGEVYRSYNQTQKKLMNLTENEQQMAQRLDLLQFQFNEIESAHLKINEDEELMEERKKLSNFEKIYDSIQTGYNALRGE
QKGLDWLGEVMGNMEEAASLDTEYKDMAESVSNSYYILEDIARQLRSALDYLEYDPKRLNEIETRLNEINTLKRKYGTTV
TDILEYAAKIEEELETLQNKETHIDLLERELASLKKDLLVEAKELNTLRRKAAVRLTDSIHQELKELYMEKTIFEVRIHA
DENNVTKKGIDVVEFYISTNPGEPLKPLSKIVSGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIHH
VSVDSQVLCISHLPQVAAMADTHLFIAKKIEDGRTSSSVTPLVQQEKIKEIGRMISGTEITELTKKHAKELLKLAQKAKN
KI

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=705042 NKG37_RS22965 WP_224427518.1 4751892..4753580(-) (recN) [Niallia sp. RD1]
TTGCTAAGTGAATTATCGATTAAAAATTTCGCAATCATAGATAGTCTATCCATTTCTTTTAAAAAGGGACTTTCTGTGCT
TACAGGTGAAACTGGTGCGGGAAAGTCAATTATTATTGATGCTATAAATTTATTAGTTGGTGGTCGTGGTTCAGCTGAAT
TTGTTCGTCATGGGGAAGAAAAGGCGGAAATTGAGGGGCTATTTTATATTGAAGATGGTCATCCATGCTTTCGGAAAATG
GATGAATTTGGCATAGATATAGACGAAGGCACCATTGTGTTAAGAAGAGATATTGCTTTGTCTGGCAAAAGTGTTTGTCG
GATTAATGGGAAGCTTATCACAATTGCTGTCCTACGTGAAATAGGTTCAACCTTAATAGATATTCATGGACAGCATGAAC
ATCAGGAATTAATGGATGAAACGAAACACTTACATTTGCTGGATACTTTTGCAATGGGAGAATTAGCCCCTGTTCTGGAA
GAATACGGGGAAGTCTACCGTTCCTATAACCAAACGCAAAAAAAATTAATGAATTTAACGGAAAATGAGCAACAAATGGC
TCAAAGACTAGATTTATTGCAATTTCAGTTTAATGAAATCGAAAGCGCTCATTTAAAAATAAACGAAGATGAAGAGCTAA
TGGAAGAAAGAAAAAAATTAAGTAATTTTGAGAAAATTTATGATAGCATCCAGACAGGTTATAACGCTCTTAGAGGAGAG
CAAAAGGGCTTGGATTGGCTTGGTGAGGTAATGGGTAATATGGAAGAAGCTGCAAGCCTTGATACCGAGTACAAAGATAT
GGCTGAATCTGTTTCAAATAGCTATTATATTTTAGAGGATATTGCAAGACAGCTGCGAAGTGCTTTAGATTACTTGGAAT
ACGATCCTAAAAGATTGAATGAGATTGAAACAAGGCTCAATGAAATCAATACATTAAAGCGGAAATATGGAACAACCGTA
ACAGATATTTTAGAGTATGCTGCTAAAATAGAAGAAGAATTAGAAACATTACAAAATAAAGAAACTCATATTGATTTATT
GGAGCGTGAGCTAGCTTCTCTGAAAAAAGATCTTTTAGTGGAAGCGAAGGAATTGAATACCTTAAGAAGAAAAGCTGCTG
TCCGTTTAACAGATAGTATTCATCAAGAATTAAAAGAACTTTACATGGAAAAGACCATTTTTGAGGTTAGAATCCATGCG
GATGAGAACAATGTCACTAAAAAAGGAATTGATGTAGTCGAATTTTATATATCCACTAACCCAGGAGAACCGTTAAAACC
ACTATCGAAAATCGTTTCTGGCGGTGAATTATCGAGAATGATGCTTGCATTAAAAAGCATTTTTTCTAAACATCAAGGCG
TTACATCCATTATATTTGATGAGGTAGATACTGGGGTAAGTGGAAGAGTCGCTCAAGCTATTGCTGAAAAAATTCATCAT
GTTTCCGTTGATTCTCAAGTGCTTTGCATATCTCACTTACCGCAAGTTGCTGCAATGGCTGATACGCATTTATTCATTGC
GAAAAAAATTGAGGATGGAAGAACCTCTAGCTCGGTAACACCATTAGTACAACAAGAAAAGATAAAAGAGATTGGACGAA
TGATTTCTGGAACAGAAATAACGGAATTAACAAAAAAACATGCAAAAGAGCTGTTAAAATTAGCGCAAAAAGCCAAGAAT
AAAATATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.195

100

0.635