Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PCP62_RS29960 Genome accession   NZ_CP115482
Coordinates   6325507..6326001 (-) Length   164 a.a.
NCBI ID   WP_023109294.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6320507..6331001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP62_RS29935 (PCP62_29915) - 6320566..6322098 (-) 1533 WP_023124321.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  PCP62_RS29940 (PCP62_29920) - 6322114..6322467 (-) 354 WP_023124322.1 hypothetical protein -
  PCP62_RS29945 (PCP62_29925) - 6322547..6323953 (-) 1407 WP_023124323.1 integrating conjugative element protein -
  PCP62_RS29950 (PCP62_29930) - 6323964..6324908 (-) 945 WP_023124324.1 TIGR03756 family integrating conjugative element protein -
  PCP62_RS29955 (PCP62_29935) - 6324905..6325354 (-) 450 WP_033980437.1 TIGR03757 family integrating conjugative element protein -
  PCP62_RS29960 (PCP62_29940) radC 6325507..6326001 (-) 495 WP_023109294.1 RadC family protein Machinery gene
  PCP62_RS29965 (PCP62_29945) - 6326197..6326940 (-) 744 WP_034021506.1 DsbA family protein -
  PCP62_RS29970 (PCP62_29950) - 6326954..6329842 (-) 2889 WP_034021504.1 conjugative transfer ATPase -
  PCP62_RS29975 (PCP62_29955) - 6329842..6330276 (-) 435 WP_034021502.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17780.46 Da        Isoelectric Point: 6.3310

>NTDB_id=705038 PCP62_RS29960 WP_023109294.1 6325507..6326001(-) (radC) [Pseudomonas aeruginosa strain F001]
MSLVIADSRPESLTLIAAQHEDWIIQQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDSQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGTTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=705038 PCP62_RS29960 WP_023109294.1 6325507..6326001(-) (radC) [Pseudomonas aeruginosa strain F001]
ATGTCTCTTGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCAGCA
GGCCATTACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCGGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAGCCAGCACCAGGTGCTCGCCTTTGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCACCCCTCGGGGACCACCGAGCCATCGGCCGCTGATCGTGCGATCACCGAGCGGCTGA
AGAGTGCCCTGGCCACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.575

89.024

0.415