Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   PCP62_RS13320 Genome accession   NZ_CP115482
Coordinates   2881709..2882314 (+) Length   201 a.a.
NCBI ID   WP_023464980.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F001     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2876709..2887314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP62_RS13320 (PCP62_13325) clpP 2881709..2882314 (+) 606 WP_023464980.1 ATP-dependent Clp protease proteolytic subunit Regulator
  PCP62_RS13325 (PCP62_13330) - 2882657..2883544 (-) 888 WP_003113144.1 metal-dependent hydrolase -
  PCP62_RS13330 (PCP62_13335) - 2883554..2885332 (-) 1779 WP_023464979.1 SDR family oxidoreductase -
  PCP62_RS13335 (PCP62_13340) - 2885329..2886204 (-) 876 WP_328996968.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22165.26 Da        Isoelectric Point: 5.6614

>NTDB_id=704996 PCP62_RS13320 WP_023464980.1 2881709..2882314(+) (clpP) [Pseudomonas aeruginosa strain F001]
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVESGDMIFDA
IRFITPKVIMIGSGSVASAGALIYAAADKEHRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQ
TPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=704996 PCP62_RS13320 WP_023464980.1 2881709..2882314(+) (clpP) [Pseudomonas aeruginosa strain F001]
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTACGCGCTCAA
GGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTCGTCCAGCAGCTGCACATCCTCGCCT
CGATCAGCGACGATCCGATCTACATGTTCGTCAATTCCCCGGGTGGCCACGTCGAATCCGGCGACATGATCTTCGACGCG
ATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTTGCCAGCGCCGGCGCGCTGATCTATGCCGCGGC
GGACAAGGAACACCGCTATTCGCTGCCCAATACCCGCTTCCTCCTGCACCAGCCGTCGGGCGGCATCCAGGGGCCGGCGA
GCAATATCGAGATCTACCGCCGCGAGATCGTGCGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAG
ACGCCGGAAAAGATCAGCGCCGACACCGAGCGCGACTTCTGGCTGAACGCGGAGGAGGCCGTGCAGTACGGCCTTGTCAA
TAAGATCATCGTTTCGGAACGGGAGATCACGCTGCCTGGCCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.195

84.08

0.363