Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NLY35_RS10505 Genome accession   NZ_CP100418
Coordinates   2097778..2099145 (-) Length   455 a.a.
NCBI ID   WP_172057894.1    Uniprot ID   -
Organism   Streptococcus suis strain STC104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2090563..2100131 2097778..2099145 within 0


Gene organization within MGE regions


Location: 2090563..2100131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY35_RS10455 (NLY35_10455) - 2090563..2091063 (+) 501 WP_024381185.1 NUDIX domain-containing protein -
  NLY35_RS10460 (NLY35_10460) - 2091052..2091339 (-) 288 WP_024390657.1 hypothetical protein -
  NLY35_RS10465 (NLY35_10465) - 2091400..2091762 (+) 363 WP_024381187.1 MerR family transcriptional regulator -
  NLY35_RS10470 (NLY35_10470) gltX 2091800..2093254 (-) 1455 WP_024381188.1 glutamate--tRNA ligase -
  NLY35_RS11380 - 2093534..2094814 (-) 1281 Protein_2030 MFS transporter -
  NLY35_RS10485 (NLY35_10485) - 2094906..2095565 (-) 660 WP_024417300.1 hypothetical protein -
  NLY35_RS10490 (NLY35_10490) - 2095570..2096016 (-) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  NLY35_RS10495 (NLY35_10495) - 2096194..2096952 (-) 759 WP_002939965.1 TIGR00266 family protein -
  NLY35_RS10500 (NLY35_10500) - 2097160..2097654 (-) 495 WP_024417299.1 carbonic anhydrase -
  NLY35_RS10505 (NLY35_10505) radA 2097778..2099145 (-) 1368 WP_172057894.1 DNA repair protein RadA Machinery gene
  NLY35_RS10510 (NLY35_10510) - 2099152..2099683 (-) 532 Protein_2036 histidine phosphatase family protein -
  NLY35_RS10515 (NLY35_10515) - 2099688..2100131 (-) 444 WP_074390173.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49899.43 Da        Isoelectric Point: 6.1921

>NTDB_id=704994 NLY35_RS10505 WP_172057894.1 2097778..2099145(-) (radA) [Streptococcus suis strain STC104]
MTIAKKKTTFVCQSCEYHLPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLEGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=704994 NLY35_RS10505 WP_172057894.1 2097778..2099145(-) (radA) [Streptococcus suis strain STC104]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTTGCCCAAATATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGACCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACTAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTCGGTGGCGGCGTGGTGCCGGGCAGTTTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACTATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCTTGGCTGGACCTAGGACCTTGGAGCATATGGTGGATACAGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTGCTCAATCCCAGCGAGGTCTTTCTGGAAGAGCGTCTGGAAGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTACAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCCGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.708

99.341

0.901
  radA Streptococcus pneumoniae R6

90.708

99.341

0.901
  radA Streptococcus pneumoniae Rx1

90.708

99.341

0.901
  radA Streptococcus pneumoniae TIGR4

90.708

99.341

0.901
  radA Streptococcus mitis SK321

90.487

99.341

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622