Detailed information NTG0704993

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP62_RS11895
• Genome accession: NZ_CP115482
• Coordinates: 2570346..2571350 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2565346..2576350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP62_RS11865 (PCP62_11870)	fghA	2565438..2566289 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP62_RS11870 (PCP62_11875)	ispF	2566360..2566833 (+)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP62_RS11875 (PCP62_11880)	truD	2566830..2567897 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PCP62_RS11880 (PCP62_11885)	surE	2567885..2568634 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP62_RS11885 (PCP62_11890)	-	2568667..2569302 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP62_RS11890 (PCP62_11895)	-	2569348..2570241 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP62_RS11895 (PCP62_11900)	rpoS	2570346..2571350 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP62_RS11900 (PCP62_11905)	fdxA	2571777..2572100 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP62_RS11905 (PCP62_11910)	mutS	2572167..2574734 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP62_RS11910 (PCP62_11915)	-	2574860..2575867 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=704993 PCP62_RS11895 WP_003113871.1 2570346..2571350(+) (rpoS) [Pseudomonas aeruginosa strain F001]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=704993 PCP62_RS11895 WP_003113871.1 2570346..2571350(+) (rpoS) [Pseudomonas aeruginosa strain F001]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653