Detailed information NTG0070498

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: EP181_RS09660
• Genome accession: NZ_AP018722
• Coordinates: 2108841..2110016 (+)
• Length: 391 a.a.
• NCBI ID: WP_127471446.1
• Uniprot ID: -
• Organism: Thiomicrorhabdus aquaedulcis strain HaS4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2103841..2115016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EP181_RS09635	coaD	2104187..2104675 (-)	489	WP_127471443.1	pantetheine-phosphate adenylyltransferase	-
EP181_RS09640	rsmD	2104771..2105457 (-)	687	WP_232023419.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
EP181_RS09645	-	2105547..2105873 (+)	327	WP_127471444.1	DUF4282 domain-containing protein	-
EP181_RS09650	-	2105925..2107274 (-)	1350	WP_232023420.1	M16 family metallopeptidase	-
EP181_RS09655	-	2107274..2108647 (-)	1374	WP_127471445.1	M16 family metallopeptidase	-
EP181_RS09660	pilA	2108841..2110016 (+)	1176	WP_127471446.1	signal recognition particle-docking protein FtsY	Machinery gene
EP181_RS09665	-	2110067..2110894 (+)	828	WP_127471447.1	DUF2914 domain-containing protein	-
EP181_RS09670	-	2110891..2111490 (+)	600	WP_127471448.1	transglycosylase SLT domain-containing protein	-
EP181_RS09675	fabB	2111631..2112851 (-)	1221	WP_127471449.1	beta-ketoacyl-ACP synthase I	-
EP181_RS09680	fabA	2112855..2113370 (-)	516	WP_127471450.1	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	-
EP181_RS09690	-	2113680..2114474 (-)	795	WP_127471451.1	type III pantothenate kinase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 42432.48 Da
• Isoelectric Point: 5.1660

>NTDB_id=70498 EP181_RS09660 WP_127471446.1 2108841..2110016(+) (pilA) [Thiomicrorhabdus aquaedulcis strain HaS4]
MFSFLRRKKTTQPDDAPLPTQETPAQDLISLTNTADVASEPSAEPNAIVTASADIAVNSTPQNSPELRLETTEQLVKPTK
AGFFTRLKQGLSKTRQSFTQSLAGLVLGRKEIDDDLLEELEMILLTADVGMAATDRIIKHLTEQVSRKELKDPESLINAL
KMQLQAMLTPIVHPLNVDDFLANNDGPFVILMVGINGVGKTTTIGKLAKKFQQEGKSVMLAAGDTFRAAAVEQLQTWGER
NNVNVIAQKTGADSAAVIFDAIQSAKAKKIDILIADTAGRLHTQSNLMEELKKVKRVIQKVDANAPHEVMLVIDAGTGQN
ALNQTQQFYDAVGVSGITLTKLDGTAKGGIVFALAQQNNIPIRFIGVGESIDDLRPFEGKEFTEALFDQSR

Nucleotide

• Length: 1176 bp

>NTDB_id=70498 EP181_RS09660 WP_127471446.1 2108841..2110016(+) (pilA) [Thiomicrorhabdus aquaedulcis strain HaS4]
ATGTTTAGCTTTTTACGCCGCAAAAAAACCACACAACCCGACGATGCTCCTTTGCCAACCCAAGAAACACCCGCCCAAGA
CCTTATTAGCCTGACCAACACCGCTGACGTGGCAAGTGAGCCATCCGCTGAACCAAACGCAATCGTGACTGCATCTGCTG
ACATTGCTGTTAACTCCACGCCACAAAACTCACCCGAGCTTAGGTTAGAAACAACAGAACAACTCGTCAAGCCAACCAAA
GCCGGTTTTTTTACGCGTCTTAAACAGGGCTTAAGCAAAACACGCCAAAGTTTCACCCAAAGCTTGGCTGGTCTGGTGTT
AGGCCGTAAAGAGATTGACGACGACTTACTCGAAGAACTTGAAATGATTTTACTTACCGCTGACGTAGGCATGGCCGCCA
CCGATCGCATCATTAAACACCTAACCGAACAAGTCAGCCGTAAAGAACTAAAAGACCCAGAAAGCCTTATTAACGCGCTT
AAAATGCAATTGCAAGCCATGCTAACACCTATTGTGCATCCCTTAAACGTGGATGACTTTTTAGCGAATAATGACGGCCC
TTTTGTTATTTTAATGGTTGGTATTAACGGCGTGGGCAAAACCACCACCATTGGAAAACTCGCCAAAAAGTTTCAACAAG
AAGGCAAGTCCGTCATGCTGGCCGCCGGAGATACCTTTAGAGCTGCGGCAGTAGAACAACTGCAAACCTGGGGCGAGCGC
AATAATGTCAACGTAATAGCACAAAAAACCGGTGCCGATTCTGCCGCGGTTATTTTTGATGCGATTCAATCAGCCAAAGC
TAAAAAAATAGACATTCTCATTGCTGATACTGCTGGACGGCTTCACACTCAATCCAACTTAATGGAAGAGCTTAAAAAAG
TAAAACGCGTCATACAGAAAGTAGACGCTAATGCACCGCATGAGGTGATGCTGGTGATTGATGCCGGAACTGGGCAAAAC
GCGCTCAACCAAACCCAGCAATTTTACGATGCCGTAGGCGTCAGCGGCATTACTCTGACCAAACTAGATGGCACAGCAAA
AGGTGGAATTGTCTTTGCTTTGGCTCAACAAAATAACATTCCCATTCGGTTTATTGGCGTGGGCGAATCAATTGATGACT
TACGTCCTTTTGAAGGCAAAGAGTTTACTGAAGCGTTATTTGACCAATCCCGTTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (99-163)

• SRP54-type protein, GTPase domain (SRP54) (187-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.936	100	0.529