Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   NJ242_RS17445 Genome accession   NZ_CP100391
Coordinates   3534304..3534423 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain PHP1601     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3529304..3539423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ242_RS17420 (NJ242_17420) - 3529543..3530301 (-) 759 WP_007609404.1 ABC transporter ATP-binding protein -
  NJ242_RS17425 (NJ242_17425) - 3530295..3531242 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  NJ242_RS17430 (NJ242_17430) ceuB 3531232..3532185 (-) 954 WP_032872883.1 ABC transporter permease Machinery gene
  NJ242_RS17435 (NJ242_17435) - 3532599..3533963 (+) 1365 WP_007609394.1 aspartate kinase -
  NJ242_RS17440 (NJ242_17440) - 3534043..3534153 (+) 111 WP_369878517.1 YjcZ family sporulation protein -
  NJ242_RS17445 (NJ242_17445) phrC 3534304..3534423 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NJ242_RS17450 (NJ242_17450) rapC 3534407..3535555 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  NJ242_RS17455 (NJ242_17455) - 3535708..3537141 (-) 1434 WP_161503657.1 sensor histidine kinase -
  NJ242_RS17460 (NJ242_17460) - 3537128..3537811 (-) 684 WP_032872879.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=704893 NJ242_RS17445 WP_003156334.1 3534304..3534423(-) (phrC) [Bacillus velezensis strain PHP1601]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=704893 NJ242_RS17445 WP_003156334.1 3534304..3534423(-) (phrC) [Bacillus velezensis strain PHP1601]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGAGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718