Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP56_RS05415 Genome accession   NZ_CP115481
Coordinates   1165485..1166009 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain F002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160485..1171009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP56_RS05400 (PCP56_05405) aroB 1161613..1162719 (-) 1107 WP_003146400.1 3-dehydroquinate synthase -
  PCP56_RS05405 (PCP56_05410) aroK 1162769..1163287 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP56_RS05410 (PCP56_05415) pilQ 1163299..1165431 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  PCP56_RS05415 (PCP56_05420) comL/pilP 1165485..1166009 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP56_RS05420 (PCP56_05425) pilO 1166006..1166629 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP56_RS05425 (PCP56_05430) pilN 1166626..1167222 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  PCP56_RS05430 (PCP56_05435) pilM 1167222..1168287 (-) 1066 Protein_1063 type IV pilus assembly protein PilM -
  PCP56_RS05435 (PCP56_05440) - 1168472..1170943 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=704870 PCP56_RS05415 WP_003116136.1 1165485..1166009(-) (comL/pilP) [Pseudomonas aeruginosa strain F002]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=704870 PCP56_RS05415 WP_003116136.1 1165485..1166009(-) (comL/pilP) [Pseudomonas aeruginosa strain F002]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTTCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362