Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PDI73_RS10110 Genome accession   NZ_CP115479
Coordinates   2073242..2073997 (+) Length   251 a.a.
NCBI ID   WP_277730203.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2068242..2078997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS10080 (PDI73_10080) - 2068301..2068750 (+) 450 WP_103054334.1 GNAT family N-acetyltransferase -
  PDI73_RS10085 (PDI73_10085) - 2068827..2069069 (+) 243 WP_012896919.1 TM2 domain-containing protein -
  PDI73_RS10090 (PDI73_10090) - 2069150..2070772 (-) 1623 WP_033900575.1 SulP family inorganic anion transporter -
  PDI73_RS10095 (PDI73_10095) - 2070982..2071503 (+) 522 WP_033900573.1 N-acetyltransferase -
  PDI73_RS10105 (PDI73_10105) - 2071968..2073143 (+) 1176 WP_277730202.1 pyridoxal phosphate-dependent aminotransferase -
  PDI73_RS10110 (PDI73_10110) recO 2073242..2073997 (+) 756 WP_277730203.1 DNA repair protein RecO Machinery gene
  PDI73_RS10115 (PDI73_10115) - 2074111..2074284 (+) 174 WP_223247194.1 helix-turn-helix transcriptional regulator -
  PDI73_RS10120 (PDI73_10120) lpdA 2074355..2075773 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  PDI73_RS10125 (PDI73_10125) - 2075967..2077565 (-) 1599 WP_012896925.1 2-oxo acid dehydrogenase subunit E2 -
  PDI73_RS10130 (PDI73_10130) - 2077558..2078538 (-) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28687.94 Da        Isoelectric Point: 6.2354

>NTDB_id=704839 PDI73_RS10110 WP_277730203.1 2073242..2073997(+) (recO) [Lactococcus lactis strain EP2]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFVMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=704839 PDI73_RS10110 WP_277730203.1 2073242..2073997(+) (recO) [Lactococcus lactis strain EP2]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGTTATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGACATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.065

98.008

0.53