Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NJ242_RS02755 Genome accession   NZ_CP100391
Coordinates   540822..541511 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain PHP1601     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535822..546511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ242_RS02730 (NJ242_02730) degS 536106..537269 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NJ242_RS02735 (NJ242_02735) degU 537346..538035 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NJ242_RS02740 (NJ242_02740) - 538133..538981 (+) 849 WP_032876160.1 DegV family protein -
  NJ242_RS02745 (NJ242_02745) - 539090..540474 (+) 1385 Protein_547 DEAD/DEAH box helicase -
  NJ242_RS02750 (NJ242_02750) - 540532..540816 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  NJ242_RS02755 (NJ242_02755) comFC 540822..541511 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  NJ242_RS02760 (NJ242_02760) - 541585..542004 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NJ242_RS02765 (NJ242_02765) flgM 542074..542340 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NJ242_RS02770 (NJ242_02770) - 542355..542837 (+) 483 WP_032876168.1 flagellar protein FlgN -
  NJ242_RS02775 (NJ242_02775) flgK 542853..544370 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  NJ242_RS02780 (NJ242_02780) flgL 544382..545299 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NJ242_RS02785 (NJ242_02785) - 545390..545959 (+) 570 WP_007407476.1 DUF6470 family protein -
  NJ242_RS02790 (NJ242_02790) fliW 545989..546420 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=704839 NJ242_RS02755 WP_196770545.1 540822..541511(+) (comFC) [Bacillus velezensis strain PHP1601]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=704839 NJ242_RS02755 WP_196770545.1 540822..541511(+) (comFC) [Bacillus velezensis strain PHP1601]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594