Detailed information NTG0704833

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NJ242_RS01785
• Genome accession: NZ_CP100391
• Coordinates: 349526..350671 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain PHP1601
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 344526..355671

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NJ242_RS01760 (NJ242_01760)	-	344809..345242 (+)	434	Protein_349	hypothetical protein	-
NJ242_RS01765 (NJ242_01765)	-	345267..347339 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
NJ242_RS01770 (NJ242_01770)	speE	347539..348369 (+)	831	WP_003151052.1	spermidine synthase	-
NJ242_RS01775 (NJ242_01775)	speB	348428..349300 (+)	873	WP_032875884.1	agmatinase	-
NJ242_RS01780 (NJ242_01780)	-	349423..349542 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
NJ242_RS01785 (NJ242_01785)	rapF	349526..350671 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
NJ242_RS01790 (NJ242_01790)	-	350902..352257 (+)	1356	WP_032875887.1	YncE family protein	-
NJ242_RS01795 (NJ242_01795)	-	352297..353673 (+)	1377	WP_032875890.1	YncE family protein	-
NJ242_RS01800 (NJ242_01800)	-	353680..354192 (-)	513	Protein_357	bacteriocin biosynthesis protein AlbG	-
NJ242_RS01805 (NJ242_01805)	-	354346..354774 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=704833 NJ242_RS01785 WP_074534220.1 349526..350671(-) (rapF) [Bacillus velezensis strain PHP1601]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=704833 NJ242_RS01785 WP_074534220.1 349526..350671(-) (rapF) [Bacillus velezensis strain PHP1601]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541