Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PDI73_RS08405 Genome accession   NZ_CP115479
Coordinates   1747008..1747778 (-) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis strain EP2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742008..1752778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS08370 (PDI73_08370) - 1742094..1742255 (-) 162 WP_058212179.1 hypothetical protein -
  PDI73_RS08375 (PDI73_08375) - 1742369..1742644 (-) 276 WP_058212178.1 hypothetical protein -
  PDI73_RS08380 (PDI73_08380) - 1742944..1743867 (-) 924 WP_277730151.1 peptidase U32 family protein -
  PDI73_RS08385 (PDI73_08385) - 1744088..1744369 (+) 282 WP_004254660.1 DUF3270 domain-containing protein -
  PDI73_RS08390 (PDI73_08390) - 1744392..1745213 (-) 822 WP_033900793.1 putative RNA methyltransferase -
  PDI73_RS08395 (PDI73_08395) - 1745331..1745957 (+) 627 WP_017865091.1 copper homeostasis protein CutC -
  PDI73_RS08400 (PDI73_08400) - 1745996..1747015 (-) 1020 WP_004254656.1 ABC transporter permease -
  PDI73_RS08405 (PDI73_08405) pptA 1747008..1747778 (-) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  PDI73_RS08410 (PDI73_08410) - 1747797..1749602 (-) 1806 WP_058204387.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  PDI73_RS08415 (PDI73_08415) - 1749880..1750281 (+) 402 WP_004254651.1 HIT family protein -
  PDI73_RS08420 (PDI73_08420) - 1750294..1750515 (+) 222 WP_010906257.1 hypothetical protein -
  PDI73_RS08425 (PDI73_08425) - 1750527..1750871 (-) 345 WP_004254648.1 hypothetical protein -
  PDI73_RS08430 (PDI73_08430) rplA 1750950..1751639 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  PDI73_RS08435 (PDI73_08435) rplK 1751936..1752361 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=704813 PDI73_RS08405 WP_004254655.1 1747008..1747778(-) (pptA) [Lactococcus lactis strain EP2]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=704813 PDI73_RS08405 WP_004254655.1 1747008..1747778(-) (pptA) [Lactococcus lactis strain EP2]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGACCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCTGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633